CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEAB (ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D   +LD ++  Y+ SQ+ +A  E+ A E AARM  M   TDNA EL  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKSLLDGLLVRYVESQVYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEA8 (ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain LESB58) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D   +LD ++  Y+ SQ+ +A  E+ A E AARM  M   TDNA EL  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKSLLDGLLVRYVESQVYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEA7 (ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain PA7) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D   +LD ++  Y+ SQ+ +A  E+ A E AARM  M   TDNA EL  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKSLLDGLLVRYVESQVYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MESSB (ATP synthase gamma chain OS=Mesorhizobium sp. (strain BNC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D   IL  ++P  +  QI RA  E+ A E+ A+M+ M   T NA E+   L++ YN++RQ +IT EL+EI++GAEAL
Sbjct:  211 YEPDAGAILADLIPRNIAVQIFRALLENAAGEMGAKMTAMDNATRNAGEMINKLTITYNRQRQAQITKELIEIISGAEAL 290          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MARMM (ATP synthase gamma chain OS=Maricaulis maris (strain MCS10) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  234 EQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 470
            E D   IL+ ++P Y ++ IL A  E+ A E+ A+M+ M   T NA EL   L++ YN+ RQ +IT EL EI++GAEAL
Sbjct:  217 EPDEETILNVLLPRYADTVILSALLENVAGEMGAKMAAMDNATRNAGELIDKLNLVYNRTRQAQITTELTEIISGAEAL 295          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ANATD (ATP synthase gamma chain OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  234 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 482
            ++++E DP  +LD ++  Y+   I  A  +S+ SE+AARM+ M   T +ADE+ + L +  N+ERQ  IT E+ EI++GA AL
Sbjct:  209 MIIYEPDPVSVLDIVIYEYIKGIIFGAMMDSYVSELAARMTAMDNATKSADEMIQKLILKLNRERQAVITQEISEIISGAAAL 291          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XYLFA (ATP synthase gamma chain OS=Xylella fastidiosa GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  234 MIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 533
            ++ A+D V  +  +     L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA++L   L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  192 LLAAKDKVAHHDWDY----LYEPDAATVLEHVMRRYIESLVYQAMLENIASEHAARMVAMKAASDNANKLIGTLQLVYNKARQAAITQEISEIVGGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIBF1 (ATP synthase gamma chain OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LDA++  Y+ SQ+ +   E+ A E  ARM  M   TDNA ++   L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  208 IYEPEPKPLLDALLVRYVESQVYQGVVENLACEHVARMIAMKAATDNAGDIIDELQLVYNKARQAAITQELSEIVSGASAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIBCM (ATP synthase gamma chain OS=Vibrio cholerae serotype O1 (strain M66-2) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LDA++  ++ SQ+ +   E+ A E AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIV GA A+
Sbjct:  208 IYEPEPKPLLDALLLRFIESQVYQGVVENLACEQAARMVAMKAATDNASNLIDDLQLVYNKARQAAITQELSEIVGGAAAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIBCH (ATP synthase gamma chain OS=Vibrio cholerae GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LDA++  ++ SQ+ +   E+ A E AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIV GA A+
Sbjct:  208 IYEPEPKPLLDALLLRFIESQVYQGVVENLACEQAARMVAMKAATDNASNLIDDLQLVYNKARQAAITQELSEIVGGAAAV 288          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_PSEAB2.527e-1145.68ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_PSEA82.527e-1145.68ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_PSEA72.527e-1145.68ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_MESSB2.527e-1143.75ATP synthase gamma chain OS=Mesorhizobium sp. (str... [more]
ATPG_MARMM2.527e-1145.57ATP synthase gamma chain OS=Maricaulis maris (stra... [more]
ATPG_ANATD2.527e-1140.96ATP synthase gamma chain OS=Anaerocellum thermophi... [more]
ATPG_XYLFA3.301e-1139.00ATP synthase gamma chain OS=Xylella fastidiosa GN=... [more]
ATPG_VIBF13.301e-1141.98ATP synthase gamma chain OS=Vibrio fischeri (strai... [more]
ATPG_VIBCM3.301e-1143.21ATP synthase gamma chain OS=Vibrio cholerae seroty... [more]
ATPG_VIBCH3.301e-1143.21ATP synthase gamma chain OS=Vibrio cholerae GN=atp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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