CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIBC3 (ATP synthase gamma chain OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LDA++  ++ SQ+ +   E+ A E AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIV GA A+
Sbjct:  208 IYEPEPKPLLDALLLRFIESQVYQGVVENLACEQAARMVAMKAATDNASNLIDDLQLVYNKARQAAITQELSEIVGGAAAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIBAL (ATP synthase gamma chain OS=Vibrio alginolyticus GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LD ++  Y+ SQ+ +   E+ A E AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIV GA A+
Sbjct:  208 IYEPEPKPLLDTLLVRYVESQVYQGVVENLACEQAARMIAMKAATDNATNLIDDLELVYNKARQAAITQELSEIVGGAAAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_THETN (ATP synthase gamma chain OS=Thermoanaerobacter tengcongensis GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  243 MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 479
            M++E  P+++ DA++P Y+   I     ++FASE  +RM  M   T NADE+ + L++ YN+ RQ  IT E++EI+ GA
Sbjct:  215 MIYEPSPSEVFDAIVPEYLKGLIYSILVQAFASEHFSRMVAMDGATSNADEMIEKLTLLYNKLRQASITQEIIEIITGA 293          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSL (ATP synthase gamma chain OS=Geobacter sulfurreducens GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = -1
Query:  234 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 494
            E +P  ++E    ++L  ++P ++  Q+ +A  ES ASE  ARM+ M   + NA E+   L++ YN+ RQ  IT EL+EI++GAE++
Sbjct:  199 EYAPEYIYEPSKGELLAELLPKHIEVQVFKALLESVASEHGARMTAMDSASKNATEMIGKLTLQYNRARQAAITTELMEIISGAESI 285          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_EXISA (ATP synthase gamma chain OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  234 MLFEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 479
            +++E +P +  IL A++P Y    I  A  ++  SE AARM+ MS  TDNADEL + L + +N+ RQ  IT E+ EIV GA AL
Sbjct:  201 VMYEYEPEEETILAALLPRYAEGLIYGALLDAKVSEHAARMTAMSSATDNADELIRGLKLKFNRARQAAITQEITEIVGGASAL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRASB (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  234 SPLMLFEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 488
            +P+ L+E +P +  IL A++P  +  QI RA  E+ AS   A+MS M   T NA E+ +  ++ YN+ RQ +IT EL+EI++GAEA+
Sbjct:  206 APVALYEYEPEEDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAQITKELIEIISGAEAV 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ANADF (ATP synthase gamma chain OS=Anaeromyxobacter sp. (strain Fw109-5) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  234 FEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            F+ +P++  +L  ++P ++  Q+ RA  ES ASE  ARMS M   T NA+E+  +L++ YN+ RQ  +T EL+EIV+GAEAL
Sbjct:  208 FKYEPSREALLRDLLPRHVAMQVWRALLESAASEHGARMSAMESATKNAEEMIASLTLQYNRARQAYVTKELMEIVSGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ACIC1 (ATP synthase gamma chain OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  234 GELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 497
            G + P   FE + A +LDA++P Y+ ++I  A  +  ASE+AAR       TDNA+EL +  +   N  RQ +IT E+ EIV GA+AL
Sbjct:  207 GGMFPQYEFEPNAAGVLDALLPRYVEARIYNALLQGAASELAARRRACKAATDNAEELIRTYTRLANAARQAEITQEISEIVGGADAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIBFM (ATP synthase gamma chain OS=Vibrio fischeri (strain MJ11) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LDA++  Y+ SQ+ +   E+ A E  ARM  M   TDNA ++   L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  208 IYEPEPKPLLDALLIRYVESQVYQGVVENLACEHVARMIAMKAATDNAGDIIDELQLVYNKARQAAITQELSEIVSGASAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_STAHJ (ATP synthase gamma chain OS=Staphylococcus haemolyticus (strain JCSC1435) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  234 VARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 527
            ++R+  +  +G++S    FE D   IL  ++P Y+ S I     ++ ASE AARM+ M   +DNA EL  +LS+ YN+ RQ +IT ++ EIV G+ AL
Sbjct:  191 LSREDSSQGQGQMSSYE-FEPDKESILSVILPQYVESLIYGTILDAKASEHAARMTAMKNASDNATELIDDLSLQYNRARQAEITQQITEIVGGSAAL 287          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_VIBC33.301e-1143.21ATP synthase gamma chain OS=Vibrio cholerae seroty... [more]
ATPG_VIBAL3.301e-1143.21ATP synthase gamma chain OS=Vibrio alginolyticus G... [more]
ATPG_THETN3.301e-1140.51ATP synthase gamma chain OS=Thermoanaerobacter ten... [more]
ATPG_GEOSL3.301e-1137.93ATP synthase gamma chain OS=Geobacter sulfurreduce... [more]
ATPG_EXISA3.301e-1145.24ATP synthase gamma chain OS=Exiguobacterium sp. (s... [more]
ATPG_BRASB3.301e-1142.53ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_ANADF3.301e-1145.12ATP synthase gamma chain OS=Anaeromyxobacter sp. (... [more]
ATPG_ACIC13.301e-1142.05ATP synthase gamma chain OS=Acidothermus celluloly... [more]
ATPG_VIBFM4.311e-1141.98ATP synthase gamma chain OS=Vibrio fischeri (strai... [more]
ATPG_STAHJ4.311e-1139.80ATP synthase gamma chain OS=Staphylococcus haemoly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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