CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SPHWW (ATP synthase gamma chain OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D   IL  ++P  +  Q+ RA  E+ ASE  +RM+ M   T NA E+   L++ YN+ RQ  IT EL+EI+AGAEAL
Sbjct:  215 YEPDEEAILTELLPRNVAVQLFRAMLENAASEQGSRMTAMDNATRNAGEMINKLTIQYNRTRQAAITTELIEIIAGAEAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS5 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            +GE++ L  +E     +L  ++P  + +QI  A  E+ ASE  ARMS M   T NA ++   L++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  201 EGEVNSLYDYEPSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIQYNRSRQAAITKELIEIISGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LEGPL (ATP synthase gamma chain OS=Legionella pneumophila (strain Lens) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +  ++LD ++  Y+  Q+ +A  E+ A E AA+M  M   TDNA +L K   +AYN+ RQ  IT EL EIV GA AL
Sbjct:  208 IYEPEAKELLDEILERYIELQVYQAVVENIACEQAAKMIAMKSATDNAGDLIKEFQLAYNKARQAAITQELAEIVGGAAAL 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LEGPH (ATP synthase gamma chain OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +  ++LD ++  Y+  Q+ +A  E+ A E AA+M  M   TDNA +L K   +AYN+ RQ  IT EL EIV GA AL
Sbjct:  208 IYEPEAKELLDEILERYIELQVYQAVVENIACEQAAKMIAMKSATDNAGDLIKEFQLAYNKARQAAITQELAEIVGGAAAL 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LEGPC (ATP synthase gamma chain OS=Legionella pneumophila (strain Corby) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +  ++LD ++  Y+  Q+ +A  E+ A E AA+M  M   TDNA +L K   +AYN+ RQ  IT EL EIV GA AL
Sbjct:  208 IYEPEAKELLDEILERYIELQVYQAVVENIACEQAAKMIAMKSATDNAGDLIKEFQLAYNKARQAAITQELAEIVGGAAAL 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LEGPA (ATP synthase gamma chain OS=Legionella pneumophila (strain Paris) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +  ++LD ++  Y+  Q+ +A  E+ A E AA+M  M   TDNA +L K   +AYN+ RQ  IT EL EIV GA AL
Sbjct:  208 IYEPEAKELLDEILERYIELQVYQAVVENIACEQAAKMIAMKSATDNAGDLIKEFQLAYNKARQAAITQELAEIVGGAAAL 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E    +IL+ ++P Y+ +Q+  A  E  ASE  A M+ M   T NA +L   L++ YN+ RQ  IT EL+EI+AGAEAL
Sbjct:  211 YEPGEEEILEELLPRYVKTQLFGALLEREASEQGASMTAMDNATRNAGDLINKLTIQYNRSRQAAITTELIEIIAGAEAL 290          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_COLP3 (ATP synthase gamma chain OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E D   +LD ++  Y+ SQ+ +   E+ A E AARM  M   TDNA +L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  206 IYEPDANSLLDKLLVRYIESQVYQGVVENIACEQAARMVAMKAATDNAGDLIDDLQLVYNKARQAAITQELGEIVAGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CLOCE (ATP synthase gamma chain OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = -1
Query:  234 LFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 563
            + +L P E  +   R+ V  ++  L   + +E    ++L+ ++P Y+   +   F E+F SE  ARM+ M   T NADE+ + L++ YN+ RQ  IT E+ EIV GA AL
Sbjct:  186 ILKLLPIE--ISALREDVKADEIVLDQRLKYEPSVTEVLNVLIPKYIKGIMYGTFVEAFTSEQNARMTAMDNATKNADEMLQKLNLYYNRARQATITQEISEIVGGASAL 293          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLSY (ATP synthase gamma chain OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  231 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 473
            +E    ++L++++P Y+ +QI +A  ES ASE +ARM  M   T+NA +L ++L++++N+ RQ  IT E+ EI +GA ALT
Sbjct:  209 YEPGEEEVLNSILPRYVETQIYQAVLESIASEHSARMVAMRNATNNAKDLVRDLTLSFNKARQAAITKEVSEIASGAAALT 289          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_SPHWW4.311e-1145.00ATP synthase gamma chain OS=Sphingomonas wittichii... [more]
ATPG_RHOS54.311e-1141.57ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_LEGPL4.311e-1143.21ATP synthase gamma chain OS=Legionella pneumophila... [more]
ATPG_LEGPH4.311e-1143.21ATP synthase gamma chain OS=Legionella pneumophila... [more]
ATPG_LEGPC4.311e-1143.21ATP synthase gamma chain OS=Legionella pneumophila... [more]
ATPG_LEGPA4.311e-1143.21ATP synthase gamma chain OS=Legionella pneumophila... [more]
ATPG_ERYLH4.311e-1143.75ATP synthase gamma chain OS=Erythrobacter litorali... [more]
ATPG_COLP34.311e-1144.44ATP synthase gamma chain OS=Colwellia psychrerythr... [more]
ATPG_CLOCE4.311e-1135.45ATP synthase gamma chain OS=Clostridium cellulolyt... [more]
ATPG_CHLSY4.311e-1141.98ATP synthase gamma chain OS=Chloroflexus aurantiac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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