CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLAA (ATP synthase gamma chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  231 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 473
            +E    ++L++++P Y+ +QI +A  ES ASE +ARM  M   T+NA +L ++L++++N+ RQ  IT E+ EI +GA ALT
Sbjct:  209 YEPGEEEVLNSILPRYVETQIYQAVLESIASEHSARMVAMRNATNNAKDLVRDLTLSFNKARQAAITKEVSEIASGAAALT 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ALISL (ATP synthase gamma chain OS=Aliivibrio salmonicida (strain LFI1238) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LDA++  Y+ SQ+ +   E+ A E  ARM  M   TDNA ++   L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  208 IYEPEPKPLLDALLIRYVESQVYQGVVENLACEHVARMIAMKAATDNAGDIIDELQLVYNKARQSAITQELSEIVSGASAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SALTO (ATP synthase gamma chain OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = -1
Query:  234 PLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 485
            P   FE +   +LDA++P Y+N++I  A  ES ASE A+R   M   TDNA+E+ +  +   N  RQ  IT E+ EIV GA AL
Sbjct:  219 PAYEFEPEAEALLDALLPKYINTRIYAALVESAASESASRRRAMKSATDNAEEMIEKYTREMNSARQAGITQEISEIVGGANAL 302          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHOBL (ATP synthase gamma chain OS=Rhodopseudomonas blastica GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = -1
Query:  234 FNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 506
            F   E + L  +E     IL  ++P  + +QI  A  E+ ASE  ARMS M   T NA ++   L++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  196 FEAAETNALYDYEPSEEAILADLLPRGVATQIFTALLENAASEQGARMSAMDNATRNAGDMINKLTIQYNRSRQAAITKELIEIISGAEAL 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PARUW (ATP synthase gamma chain OS=Protochlamydia amoebophila (strain UWE25) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = -1
Query:  234 KGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            K E SP+  +FE +P QI  A++  Y  ++      ES+ASE+AAR+  M   T NAD++ + L++  N+ RQ  IT E+LEI +GAE L
Sbjct:  195 KSEKSPVDYIFEPNPKQIYGAILFNYCMTKFQSILNESYASELAARIFAMKAATSNADDMIEKLTLVRNKVRQAGITKEMLEITSGAEGL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MACCJ (ATP synthase gamma chain OS=Macrococcus caseolyticus (strain JCSC5402) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE D   IL+ ++P Y  S I  A  +  ASE A+RM+ M   TDNA EL  +LS+ YN+ RQ  IT ++ EIV GA AL
Sbjct:  208 FEPDKDAILEVILPQYAESLIYGAILDGKASEHASRMTAMKNATDNAKELIDDLSLQYNRARQAAITQQITEIVGGAAAL 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LEIXX (ATP synthase gamma chain OS=Leifsonia xyli subsp. xyli GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  231 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 503
            ++ ++ PL  FE D   +LD+++P+Y+ S+I  A  +S AS+ AA    M   +DNAD+L  + +   N  RQ +IT ++ EIV GA+AL+
Sbjct:  206 DRTQVLPLYEFEPDVNTVLDSLLPVYIESRIFNAMLQSAASKHAATQKAMKAASDNADKLITDYTRLANNARQAEITQQISEIVGGADALS 296          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_JANSC (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  234 LFEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E +P++  +L+ ++P  + +QI  A  E+ ASE  ARMS M   T NA ++   L++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  214 LYEYEPSEEAVLEDLLPRGIATQIFTALLENGASEQGARMSAMDNATRNAGDMIDRLTIEYNRSRQAVITSELIEIISGAEAL 296          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_GEOBB (ATP synthase gamma chain OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = -1
Query:  234 TFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 509
            T +  E+    ++E   A +LD ++P ++  Q+ ++  ES ASE  ARM+ M   + NA E+   L++ YN+ RQ  IT EL+EI++G+E++
Sbjct:  194 TADTDEVGTEYIYEPSKAALLDELLPKHIEVQVFKSLLESVASEHGARMTAMDSASKNATEMIGKLTLIYNRARQAAITTELMEIISGSESI 285          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_FRASC (ATP synthase gamma chain OS=Frankia sp. (strain CcI3) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -1
Query:  234 PLMLFEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 485
            PL  +E +P+   +LDA++P Y+ S++  A  ES ASE AAR   M   TDNA++L K  +   N+ RQ  IT E+ EIV GA AL
Sbjct:  209 PLPQYEFEPSAEGVLDALLPRYVESRLYAALLESAASESAARQRAMKSATDNAEDLIKRYTRQANRARQDAITQEISEIVGGANAL 294          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_CHLAA4.311e-1141.98ATP synthase gamma chain OS=Chloroflexus aurantiac... [more]
ATPG_ALISL4.311e-1141.98ATP synthase gamma chain OS=Aliivibrio salmonicida... [more]
ATPG_SALTO5.630e-1144.05ATP synthase gamma chain OS=Salinispora tropica (s... [more]
ATPG_RHOBL5.630e-1141.76ATP synthase gamma chain OS=Rhodopseudomonas blast... [more]
ATPG_PARUW5.630e-1142.22ATP synthase gamma chain OS=Protochlamydia amoebop... [more]
ATPG_MACCJ5.630e-1147.50ATP synthase gamma chain OS=Macrococcus caseolytic... [more]
ATPG_LEIXX5.630e-1138.46ATP synthase gamma chain OS=Leifsonia xyli subsp. ... [more]
ATPG_JANSC5.630e-1143.37ATP synthase gamma chain OS=Jannaschia sp. (strain... [more]
ATPG_GEOBB5.630e-1135.87ATP synthase gamma chain OS=Geobacter bemidjiensis... [more]
ATPG_FRASC5.630e-1145.35ATP synthase gamma chain OS=Frankia sp. (strain Cc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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