CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ROSS1 (ATP synthase gamma chain OS=Roseiflexus sp. (strain RS-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  228 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 473
            +E    ++L  ++P ++  Q+ +A  E+ ASE +ARM  M   TDNA EL+++L+++YN+ RQ  IT E+ EI +GA AL +
Sbjct:  208 YEPSQEEVLRELLPRFVEVQLYQAVLEAIASEHSARMVAMRNATDNAKELQRDLTLSYNKTRQANITKEVSEIASGAAALAE 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSYWF (ATP synthase gamma chain OS=Psychrobacter sp. (strain PRwf-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  231 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 494
            ELS   ++E D   ++D ++  Y+ S + +A  E+ ASE +ARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV GA A++
Sbjct:  206 ELSWDYIYEPDVKTLIDGLLNRYIESIVYQAVMENIASEQSARMVAMKAATDNAGDLINDLQLVYNKLRQAAITREISEIVGGAAAVS 293          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSM (ATP synthase gamma chain OS=Geobacter sp. (strain M21) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/112 (32.14%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            ++L  +TP  G           +  E+    ++E   A +LD ++P ++  Q+ ++  ES ASE  ARM+ M   + NA E+   L++ YN+ RQ  IT EL+EI++G+E++
Sbjct:  185 EQLLPVTPKAG-----------DDDEVGTEYIYEPSKAALLDELLPKHIEVQVFKSLLESVASEHGARMTAMDSASKNATEMIGKLTLIYNRARQAAITTELMEIISGSESI 285          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_DIAST (ATP synthase gamma chain OS=Diaphorobacter sp. (strain TPSY) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E D   ++D ++  Y+ S I +A  E+ ASE +ARM  M   TDNA  +   L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  208 IYEPDAQSVIDELLVRYVESLIYQAVAENMASEQSARMVAMKAATDNAGNVINELKLVYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHRVO (ATP synthase gamma chain OS=Chromobacterium violaceum GN=atpG PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D   +++ ++  Y+ S + +A  E+ ASE AARM  M   TDNA    K L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  208 LYEPDAPTLMEFLVRRYLESVVYQALAENMASEQAARMVAMKAATDNAGNTIKQLRLVYNKARQAAITTELSEIVAGAAAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BUCAT (ATP synthase gamma chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  231 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 476
            L+E +   ILD +   Y+ SQ+ ++  E+ ASE AARM  M   TDN+    K L + YN+ RQ  IT EL EIV+GA A++
Sbjct:  207 LYEPESKLILDTLFNRYIESQVYQSILENIASEHAARMIAMKTATDNSGNRIKELQLVYNKVRQANITQELNEIVSGASAVS 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BUCAI (ATP synthase gamma chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  231 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 476
            L+E +   ILD +   Y+ SQ+ ++  E+ ASE AARM  M   TDN+    K L + YN+ RQ  IT EL EIV+GA A++
Sbjct:  207 LYEPESKLILDTLFNRYIESQVYQSILENIASEHAARMIAMKTATDNSGNRIKELQLVYNKVRQANITQELNEIVSGASAVS 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BUCA5 (ATP synthase gamma chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  231 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 476
            L+E +   ILD +   Y+ SQ+ ++  E+ ASE AARM  M   TDN+    K L + YN+ RQ  IT EL EIV+GA A++
Sbjct:  207 LYEPESKLILDTLFNRYIESQVYQSILENIASEHAARMIAMKTATDNSGNRIKELQLVYNKVRQANITQELNEIVSGASAVS 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BLOFL (ATP synthase gamma chain OS=Blochmannia floridanus GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D   +LD ++  Y+ SQ+ +   E+ ASE +ARM  M   +DN + + K+L V YN+ RQ KIT EL EI++G+  +
Sbjct:  208 LYEPDSKVLLDTLLNRYIESQVYQGVVENLASEQSARMIAMKTASDNGETIIKDLRVFYNKLRQSKITQELAEIISGSSVI 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ALKMQ (ATP synthase gamma chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = -1
Query:  234 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 494
            E    M +E  P ++LD ++P Y+ S +  A  ES  S+  A    M   TDNA ++   L + YN+ RQ  IT E+ EIV+GAEAL
Sbjct:  202 ERDEFMSYEPSPEEVLDYLIPKYIESMLYGALVESSTSQQGATRVAMESATDNATDMIDGLQLQYNRARQASITQEIAEIVSGAEAL 288          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_ROSS17.353e-1140.24ATP synthase gamma chain OS=Roseiflexus sp. (strai... [more]
ATPG_PSYWF7.353e-1140.91ATP synthase gamma chain OS=Psychrobacter sp. (str... [more]
ATPG_GEOSM7.353e-1132.14ATP synthase gamma chain OS=Geobacter sp. (strain ... [more]
ATPG_DIAST7.353e-1143.21ATP synthase gamma chain OS=Diaphorobacter sp. (st... [more]
ATPG_CHRVO7.353e-1144.44ATP synthase gamma chain OS=Chromobacterium violac... [more]
ATPG_BUCAT7.353e-1143.90ATP synthase gamma chain OS=Buchnera aphidicola su... [more]
ATPG_BUCAI7.353e-1143.90ATP synthase gamma chain OS=Buchnera aphidicola su... [more]
ATPG_BUCA57.353e-1143.90ATP synthase gamma chain OS=Buchnera aphidicola su... [more]
ATPG_BLOFL7.353e-1140.74ATP synthase gamma chain OS=Blochmannia floridanus... [more]
ATPG_ALKMQ7.353e-1140.23ATP synthase gamma chain OS=Alkaliphilus metallire... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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