CF831928 | Citrus Genome Database

Overview


Name	CF831928
Unique Name	CF831928
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	852

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6872	contig	Csv1_Contig6872:177..1028.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 7.867e-12
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RK  +TP G
Sbjct:  216 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPTTPWG 255

HSP 2 Score: 41.5874 bits (96), Expect = 7.867e-12
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K P   WGY AL RRSRK+NKY+D+LIL
Sbjct:  248 KNPTTPWGYPALGRRSRKRNKYSDSLIL 275

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248

HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY++NLIL
Sbjct:  241 KKPATPWGYPALGRRSRKRNKYSENLIL 268

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248

HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY++NLIL
Sbjct:  241 KKPATPWGYPALGRRSRKRNKYSENLIL 268

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248

HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY++NLIL
Sbjct:  241 KKPATPWGYPALGRRSRKRNKYSENLIL 268

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248

HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY++NLIL
Sbjct:  241 KKPATPWGYPALGRRSRKRNKYSENLIL 268

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248

HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY++NLIL
Sbjct:  241 KKPATPWGYPALGRRSRKRNKYSENLIL 268

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_RANMC (50S ribosomal protein L2, chloroplastic OS=Ranunculus macranthus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.022e-11
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 42.3578 bits (98), Expect = 1.022e-11
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D+LIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.022e-11
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 42.3578 bits (98), Expect = 1.022e-11
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D+LIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_ATRBE (50S ribosomal protein L2-B, chloroplastic OS=Atropa belladonna GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.022e-11
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +++ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVNHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 44.2838 bits (103), Expect = 1.022e-11
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.023e-11
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 39.2762 bits (90), Expect = 1.023e-11
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D  IL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDIFIL 269

The following BLAST results are available for this feature:

BLAST of CF831928 vs. ExPASy Swiss-Prot

BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
RK2_PLAOC	7.867e-12	57.50	50S ribosomal protein L2, chloroplastic OS=Platanu...	[more]
RK2_OENPA	7.876e-12	61.11	50S ribosomal protein L2, chloroplastic OS=Oenothe...	[more]
RK2_OENGL	7.876e-12	61.11	50S ribosomal protein L2, chloroplastic OS=Oenothe...	[more]
RK2_OENEH	7.876e-12	61.11	50S ribosomal protein L2, chloroplastic OS=Oenothe...	[more]
RK2_OENBI	7.876e-12	61.11	50S ribosomal protein L2, chloroplastic OS=Oenothe...	[more]
RK2_OENAR	7.876e-12	61.11	50S ribosomal protein L2, chloroplastic OS=Oenothe...	[more]
RK2_RANMC	1.022e-11	61.11	50S ribosomal protein L2, chloroplastic OS=Ranuncu...	[more]
RK2_NANDO	1.022e-11	61.11	50S ribosomal protein L2, chloroplastic OS=Nandina...	[more]
RK2B_ATRBE	1.022e-11	58.33	50S ribosomal protein L2-B, chloroplastic OS=Atrop...	[more]
RK2_NYMAL	1.023e-11	60.00	50S ribosomal protein L2, chloroplastic OS=Nymphae...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_01A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bp
GCCCCTTTAGACTATGTCATGTGCATTAAAATTTCGATTTTCTCTCCTAT
TTAATACCGTTGAAAAGAATTAAATTATCATTATATTTATTCTTTTTCCT
GCTTCGTCTTCAAAGTGCAAGATAACCCCAAAGGGGTTGAGGCCTTTTTT
CTACAAATCGATACCCTTCCTTTACCACCCCAATGGAGGTAGTCTATGGA
ATTCATAACTACTCCTCTTACAGCAGGATTCTTGAACCAACAATCAGTTC
AAGAAATTAAAAAAAAGGCAGACCTGAAATAAGAATAGAACTCTCAAGTT
TTGCTTCAAAATATAAATAAGTGAAAACCATAGATTTCAGATTTATTAAT
GAAAGCTATGAGAAAGTTTGGTTTTACACCAGTGCATTATTTAGAGGGTT
CAATGAATGATGATACCCCTCTGTTAATATTGTTGTTACTCTGCAGCTGG
TTTGCTAGTCTCATCCTTGCATCTAGGTTGATGATTGTGATTTTTCAACT
CATCTCCAGCCACAAGAAAGAATGCAGTGTGTCTGAAAAAATTCATCATT
TTGATTTTTGAGTCAGCATCAATTTCTGGGGTACTGTCTAGTGCAATCTG
CATATGATGTAACCATCTCTCTGCAGCTTGATGTGTTACTGGGAATGGTC
GATGACGTCCAATTAATGCAGGATGGCCTTTCCTCTGAGAATACAGAGGA
GGCCCTCCCATTCTCTGCACAAAAAACTCATATTGGTTCTGAATTGCTTC
TTCTTTATTCGAATTTGCAAAAATTGACCTAAACCACTCTTCCTCGTCGT
CATAAACCCTGGTATAGAAGTTGGTGGAGAGATTGATGAAAGTTTGAAGG
CC