CF831928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NUPAD (50S ribosomal protein L2, chloroplastic OS=Nuphar advena GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.023e-11 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 39.2762 bits (90), Expect = 1.023e-11 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D IL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDIFIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.723e-11 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 211 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 250 HSP 2 Score: 38.5058 bits (88), Expect = 1.723e-11 Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+ KY+D+ IL Sbjct: 243 KKPTTPWGYPALGRRSRKRKKYSDSFIL 270
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.906e-11 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 40.817 bits (94), Expect = 2.906e-11 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+ IL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDSFIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_JASNU (50S ribosomal protein L2, chloroplastic OS=Jasminum nudiflorum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 3.771e-11 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 40.4318 bits (93), Expect = 3.771e-11 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RSRK+NKY++NLIL Sbjct: 242 KKPTTPWGYPALGSRSRKRNKYSENLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_DRIGR (50S ribosomal protein L2, chloroplastic OS=Drimys granadensis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 3.772e-11 Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGV MN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVAMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 38.891 bits (89), Expect = 3.772e-11 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D IL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDIYIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 4.895e-11 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 36.965 bits (84), Expect = 4.895e-11 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RR+RK+ KY++ LIL Sbjct: 242 KKPATPWGYPALGRRTRKRKKYSETLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 4.895e-11 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 36.965 bits (84), Expect = 4.895e-11 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RR+RK+ KY++ LIL Sbjct: 242 KKPATPWGYPALGRRTRKRKKYSETLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.9062 bits (115), Expect = 4.895e-11 Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN ID+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPIDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 39.6614 bits (91), Expect = 4.895e-11 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK NKY+DN I+ Sbjct: 242 KKPTTPWGYPALGRRSRKINKYSDNFIV 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_WHEAT (50S ribosomal protein L2, chloroplastic OS=Triticum aestivum GN=rpl2-A PE=3 SV=2) HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11 Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+G+ I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249 HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RR+RK+ KY+D+ IL Sbjct: 242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11 Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+G+ I RKK +TP G Sbjct: 208 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 247 HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RR+RK+ KY+D+ IL Sbjct: 240 KKPTTPWGYPALGRRTRKRKKYSDSFIL 267 The following BLAST results are available for this feature:
BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bpback to top |