CF831929

Overview
NameCF831929
Unique NameCF831929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:94..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  267 HFDMAEPAFLQIAQ-------YRAGIVPISFRRVPCAKKG-GIRFTVN--GHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSL----SFQLTASDGRTVTSNNVVPGNW 611
            HFDM+  +   +A+         AGI+ + +RRVPC   G  I F V+   + ++  VLI    G GD+++V +  +  GW  M +NWG  W+ NS   G++L    S +LT+  G+ + +NNV+P +W
Sbjct:  152 HFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASW 279          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.353e-11
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = -3
Query:  267 HFDMAEPAFLQIAQ-------YRAGIVPISFRRVPCAKKG---GIRFTVNGHSYFNLVLITNVGGAGDVHSVSI-----KGSKTGWQAMSRNWGQNWQSNSYLNGQS-----LSFQLTASDGRTVTSNNVVPGNW 611
            HFD++  AF  +A+         AG +P+ + RVPC  +G     R     + Y+  VL+ +  G GD+ +V +      G    W AM ++WG  W+ NS   G +     +S +LT+  GRT+ ++NV+P  W
Sbjct:  126 HFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGW 257          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  267 HFDMAEPAFLQIA------QYRA-GIVPISFRRVPCAKKGGIRFT----VNGHSYFNLVLITNVGGAGDVHSVSIK--GSKTGWQAMSRNWGQNWQSNSYLNGQS-LSFQLTASDGRTVTSNNVVPGNW 611
            HFD++  AF  +A      Q RA G++ I + RVPC   GG++ T    V  +  +  VL+    G GD+  V +   G+   W  M ++WG  W+ N+    Q+  S +LT+S G+T+ ++NV+P  W
Sbjct:  125 HFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGW 252          
The following BLAST results are available for this feature:
BLAST of CF831929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXB11_ORYSJ3.560e-1234.11Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ1.353e-1131.11Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ8.770e-1133.33Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831929 ID=CF831929; Name=CF831929; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTGAACGATTTATACCCGTTCATTCAATTGAAGTAATAACTATA
TATCGTACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGA
CCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTA
CCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAA
TATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAA
AGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACA
GTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAG
ATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCC
ATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCT
CCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGT
AAACCTTATTCCTCCTTTCTTCGCACACGGGACCCTTCTGAAGGAAATTG
GGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCC
ATGTCAAAGTGCTGGAGGGGAGGAT
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