CF831931

Overview
NameCF831931
Unique NameCF831931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:93..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = -2
Query:  268 VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVN--GHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSL----SFQLTASDGRTVTSNNVVPGNW 690
            V  T+ CP         GG C     HFDM+  +   +A+         AGI+ + +RR+PC   G  I F V+   + ++  VLI    G GD+++V +  +  GW  M +NWG  W+ NS   G++L    S +LT+  G+ + +NNV+P +W
Sbjct:  135 VVITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASW 279          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = -2
Query:  268 IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG---GIRFTVNGHSYFNLVLITNVGGAGDVHSVSI-----KGSKTGWQAMSRNWGQNWQSNSYLNGQS-----LSFQLTASDGRTVTSNNVVPGNW 696
            + V  T+ CP         GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G     R     + Y+  VL+ +  G GD+ +V +      G    W AM ++WG  W+ NS   G +     +S +LT+  GRT+ ++NV+P  W
Sbjct:  107 VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGW 257          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 49/157 (31.21%), Postives = 78/157 (49.68%), Query Frame = -2
Query:  268 IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA------QYRA-GIVPISFRRIPCAKKGGIRFT----VNGHSYFNLVLITNVGGAGDVHSVSIK--GSKTGWQAMSRNWGQNWQSNSYLNGQS-LSFQLTASDGRTVTSNNVVPGNW 696
            + V  T+ CP         GG C     HFD++  AF  +A      Q RA G++ I + R+PC   GG++ T    V  +  +  VL+    G GD+  V +   G+   W  M ++WG  W+ N+    Q+  S +LT+S G+T+ ++NV+P  W
Sbjct:  106 VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGW 252          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = -2
Query:  268 IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA------QYRA-GIVPISFRRIPCAKKGGIRFTV-----NGHSYFNLVLITNVGGAGDVHSVSIK--GSKTGWQAMSRNWGQNWQSNSYLNGQS-LSFQLTASDGRTVTSNNVVPGNW 696
            + V  T+ CP         GG C     HFD++  AF  +A      Q RA G++ I + R+PC   GG+  T      +  SYF  VL+    G GD+  + +   G+   W  M ++WG  W+ ++    Q+ LS +LT+S G+T+ ++NV+P  W
Sbjct:  106 VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTSSSGKTLVASNVIPSGW 252          
The following BLAST results are available for this feature:
BLAST of CF831931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXB11_ORYSJ2.395e-1332.26Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ4.085e-1329.45Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ7.703e-1231.21Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ3.823e-1131.65Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831931 ID=CF831931; Name=CF831931; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTTTGAACGATATTATACCCGTTCATTCAATTGAAGTAATAACTAT
ATATCTAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAG
ACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCT
ACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAA
ATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCA
AAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCAC
AGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAA
GATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGC
CATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCC
TCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGG
TAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAATT
GGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGC
CATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTTAG
ACAGGGCAAGGTTAGGTGGGCAGAAGTTGGTGGCGGTGACAATGATGGAG
CCG
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