CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP7 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7424) GN=atpG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.705e-31
Identity = 69/112 (61.61%), Postives = 89/112 (79.46%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRL T  GK  VER+ V+ +       M+FEQDP QILD+++PLY+N+Q+LRALQES ASE+AARM+AMS+A+DNA EL K LS++YN+ RQA IT E+LE+VAGA AL
Sbjct:  203 DEIFRLVTKGGKFQVEREKVSASVSSFPQDMIFEQDPVQILDSLLPLYLNNQLLRALQESAASELAARMTAMSSASDNAGELIKTLSLSYNKARQAAITQEILEVVAGANAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP4 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpG PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.478e-31
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT  G+  V+R+ V+     +   M+FEQDP QILDA++PLY+N+Q+LRALQES ASE+AARM+AM+ A+DNA EL K LS+ YN+ RQA IT E+LE+V GAEAL
Sbjct:  203 DEIFRLTTRGGRFEVQREKVSSATQSMPQDMIFEQDPLQILDALLPLYLNNQLLRALQESAASELAARMTAMNNASDNAKELIKGLSMTYNKARQAAITQEILEVVGGAEAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CYAA5 (ATP synthase gamma chain OS=Cyanothece sp. (strain ATCC 51142) GN=atpG PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.461e-31
Identity = 67/112 (59.82%), Postives = 89/112 (79.46%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRL T EGK+ VER++VT         M+FEQDP QILDA++PLY+N+Q+LRALQE+ ASE+AARM+AMS A+DNA +L   L+++YN+ RQA IT +L+E+VAGA AL
Sbjct:  203 DEIFRLITREGKLQVERETVTQTMSSFPQDMIFEQDPVQILDALLPLYINNQLLRALQEAAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQQLMEVVAGANAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP1 (ATP synthase gamma chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.462e-30
Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT    + V R+ VT N   L P M+FEQDP QILDA++PLY+++Q+LRALQE+ ASE+AARM+AM+ A+DNA  L   L+++YN+ RQA IT E+LE+VAGAEAL
Sbjct:  203 DEIFRLTTRASHLEVNREKVTSNLPALPPDMIFEQDPVQILDALLPLYLSNQLLRALQEAAASELAARMTAMNNASDNAQTLIGTLTLSYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP6 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT  G   VER+ +T     L   M+FEQDPAQIL A++PLY+++Q+LRALQE+ ASE+AARM+AM++A+DNA+ L   L++ YN+ RQA IT ELLE+VAGAEAL
Sbjct:  203 DEIFRLTTRGGSFTVEREKLTSEVAPLPRDMIFEQDPAQILSALLPLYLSNQLLRALQEAAASELAARMTAMNSASDNANALVGQLTLVYNKARQAAITQELLEVVAGAEAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNE7 (ATP synthase gamma chain OS=Synechococcus elongatus (strain PCC 7942) GN=atpG PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT  G   VER+ +T     L   M+FEQDPAQIL A++PLY+++Q+LRALQE+ ASE+AARM+AM++A+DNA+ L   L++ YN+ RQA IT ELLE+VAGAEAL
Sbjct:  203 DEIFRLTTRGGSFTVEREKLTSEVAPLPRDMIFEQDPAQILSALLPLYLSNQLLRALQEAAASELAARMTAMNSASDNANALVGQLTLVYNKARQAAITQELLEVVAGAEAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJA (ATP synthase gamma chain OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpG PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.222e-29
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+F L    G+  VER  +        P M+FEQDP QILDA++PLY+N+Q+LRALQE+ ASE+AARM+AMS A+DNA EL + L +AYN+ RQA IT E+LE+VAGAEAL
Sbjct:  203 DEIFNLLVRGGEFTVERSKIVAAVSAPPPDMIFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAMSNASDNATELIRTLGLAYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MICAN (ATP synthase gamma chain OS=Microcystis aeruginosa (strain NIES-843) GN=atpG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.722e-29
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRL T EGK  V+R+ +     ++ P  M+FEQ+P QILD+++PLY+N+Q+LRALQES ASE+AARM+AMS A++NA EL   LS  YN+ RQA IT ELLE+VAGA AL
Sbjct:  203 DEIFRLVTKEGKFKVQREKMASQPAQVFPQDMIFEQNPVQILDSLLPLYLNNQLLRALQESAASELAARMTAMSNASENASELIGTLSRTYNKARQAAITQELLEVVAGANAL 315          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_THEEB (ATP synthase gamma chain OS=Thermosynechococcus elongatus (strain BP-1) GN=atpG PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.643e-29
Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT    + V R+ VT     L   M+FEQDP QILDA++PLY+N+Q+LRALQE+ ASE+AARM+AM+ A+DNA  L   L+++YN+ RQA IT E+LE+VAGAEAL
Sbjct:  203 DEIFRLTTRGSHLEVNREKVTSTLPALPSDMIFEQDPLQILDALLPLYLNNQLLRALQEAAASELAARMTAMNNASDNAQALIGTLTLSYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJB (ATP synthase gamma chain OS=Synechococcus sp. GN=atpG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.643e-29
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRL    G+  VER  V          M+FEQDP QILDA++PLY+N+Q+LRALQE+ ASE+AARM+AM+ A+DNA EL + L +AYN+ RQA IT E+LE+VAGAEAL
Sbjct:  203 DEIFRLLVRGGEFTVERSKVIAAVSAPPQDMIFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAMNNASDNASELIRTLGLAYNKARQAAITQEILEVVAGAEAL 314          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_CYAP71.705e-3161.61ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_CYAP46.478e-3160.71ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_CYAA58.461e-3159.82ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_SYNP12.462e-3059.82ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNP65.484e-3059.82ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNE75.484e-3059.82ATP synthase gamma chain OS=Synechococcus elongatu... [more]
ATPG_SYNJA1.222e-2958.93ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_MICAN2.722e-2959.29ATP synthase gamma chain OS=Microcystis aeruginosa... [more]
ATPG_THEEB4.643e-2958.93ATP synthase gamma chain OS=Thermosynechococcus el... [more]
ATPG_SYNJB4.643e-2958.93ATP synthase gamma chain OS=Synechococcus sp. GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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