CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_AERHH (ATP synthase gamma chain OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP Q+LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  208 LYEPDPKQLLDTLLIRYVESQVYQGVVENLASEQAARMVAMQAATDNAGNLINDLQLVYNKARQASITQELTEIVSGAAAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_THEFY (ATP synthase gamma chain OS=Thermobifida fusca (strain YX) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = -1
Query:  235 KGELSPLMLFEQDPA--QILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 501
            + E  PL L+E +P   ++LD ++P Y+ ++I  AL ES AS+ A+R +AM  ATDNA+EL K L+   NQ RQA+IT E+ EIV GA+AL
Sbjct:  206 EAEQGPLPLYEFEPGAEEVLDQLLPKYVTNRIYFALLESAASQHASRRAAMKAATDNAEELVKTLTRQANQARQAEITNEISEIVGGADAL 296          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROAC (ATP synthase gamma chain OS=Propionibacterium acnes GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  229 TNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 549
            T EG++      V  N  E+     FE +P  +LD ++PLY+ +++  AL +S ASE+A+R  AM  ATDNA++L + L+   NQ RQA IT E+ EIV GA AL +
Sbjct:  203 TPEGQLAEGDPGVGANAEEIFHEYRFEPNPVSVLDELLPLYVANRVHYALLQSAASELASRQRAMKAATDNAEQLIQTLTRQANQARQAAITQEITEIVGGAAALAE 309          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYXXD (ATP synthase gamma chain OS=Myxococcus xanthus (strain DK 1622) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E D   +LD ++P  +N ++ RAL ES ASE  ARMSAM  AT NA ++  NL++ YN+ RQA IT EL+EIV+GAEAL
Sbjct:  214 YEPDRQSVLDRLVPQAVNIKLYRALLESVASEHGARMSAMENATSNATDMIGNLTLTYNRTRQAVITKELMEIVSGAEAL 293          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCTU (ATP synthase gamma chain OS=Mycobacterium tuberculosis GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  229 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 483
            L  FE D   + ++++P Y+ +++  AL ES ASE+A+R  AM +ATDNAD+L K L++  N+ERQA+IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCTA (ATP synthase gamma chain OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  229 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 483
            L  FE D   + ++++P Y+ +++  AL ES ASE+A+R  AM +ATDNAD+L K L++  N+ERQA+IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCBT (ATP synthase gamma chain OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  229 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 483
            L  FE D   + ++++P Y+ +++  AL ES ASE+A+R  AM +ATDNAD+L K L++  N+ERQA+IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCBP (ATP synthase gamma chain OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  229 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 483
            L  FE D   + ++++P Y+ +++  AL ES ASE+A+R  AM +ATDNAD+L K L++  N+ERQA+IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCBO (ATP synthase gamma chain OS=Mycobacterium bovis GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  229 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 483
            L  FE D   + ++++P Y+ +++  AL ES ASE+A+R  AM +ATDNAD+L K L++  N+ERQA+IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MANSM (ATP synthase gamma chain OS=Mannheimia succiniciproducens (strain MBEL55E) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP  +LD+++  Y+ SQ+ +++ ++ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  209 IYEPDPKMLLDSLLTRYLESQVYQSVVDNLASEQAARMVAMKAATDNAGNLINDLQLVYNKARQASITNELNEIVAGAAAI 289          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_AERHH2.237e-1551.85ATP synthase gamma chain OS=Aeromonas hydrophila s... [more]
ATPG_THEFY2.921e-1549.45ATP synthase gamma chain OS=Thermobifida fusca (st... [more]
ATPG_PROAC2.921e-1542.99ATP synthase gamma chain OS=Propionibacterium acne... [more]
ATPG_MYXXD2.921e-1553.75ATP synthase gamma chain OS=Myxococcus xanthus (st... [more]
ATPG_MYCTU2.921e-1548.24ATP synthase gamma chain OS=Mycobacterium tubercul... [more]
ATPG_MYCTA2.921e-1548.24ATP synthase gamma chain OS=Mycobacterium tubercul... [more]
ATPG_MYCBT2.921e-1548.24ATP synthase gamma chain OS=Mycobacterium bovis (s... [more]
ATPG_MYCBP2.921e-1548.24ATP synthase gamma chain OS=Mycobacterium bovis (s... [more]
ATPG_MYCBO2.921e-1548.24ATP synthase gamma chain OS=Mycobacterium bovis GN... [more]
ATPG_MANSM2.921e-1549.38ATP synthase gamma chain OS=Mannheimia succinicipr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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