CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CORJK (ATP synthase gamma chain OS=Corynebacterium jeikeium (strain K411) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE DP  +L A++P Y++  I  A+ ES ASE AAR +AMS ATDNA +L K LS   NQ RQA+IT E+ EIV GA AL
Sbjct:  240 FEPDPDTLLKALLPQYVSRGIFAAMLESAASESAARRTAMSAATDNATDLVKQLSRVANQARQAQITQEITEIVGGASAL 319          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ARTS2 (ATP synthase gamma chain OS=Arthrobacter sp. (strain FB24) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = -1
Query:  235 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            ++ +L PL  FE +  Q+LDA++P Y+ S+I  A+ ++ ASE+AAR  AM +A DNA +L K  +   N  RQA+IT EL EIVAGA+AL
Sbjct:  205 SESDLLPLYEFEPETEQVLDALLPRYIESRIFAAMLQAAASELAARQRAMKSAGDNATDLIKKYTRLRNTARQAEITQELSEIVAGADAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ARTCA (ATP synthase gamma chain OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 45/99 (45.45%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  235 IVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 531
            +VE ++ +  + +L PL  FE +  Q+LDA++P Y+ S++  A+ ++ ASE+AAR  AM +A DNA +L K  +   N  RQA+IT EL EIVAGA+AL
Sbjct:  198 VVEEEAAS--ESDLLPLYEFEPETEQVLDALLPRYIESRLFAAMLQAAASELAARQRAMKSAGDNATDLIKKYTRLRNTARQAEITQELSEIVAGADAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_AGRT5 (ATP synthase gamma chain OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E D A IL+ ++P  ++ Q+ RAL E+ A E+ A+MSAM  AT NA E+   L+++YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDAASILEDLIPRNISVQVFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHESH (ATP synthase gamma chain OS=Shewanella sediminis (strain HAW-EB3) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP ++L+ ++  Y+ SQ+ + + E+ ASE AARM AM +ATDNA +L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  206 LYEPDPKELLETLLVRYVESQVYQGVVENLASEQAARMVAMKSATDNAGDLISDLQLVYNKARQAAITQELSEIVAGAAAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB9 (ATP synthase gamma chain OS=Shewanella baltica (strain OS195) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM +ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB8 (ATP synthase gamma chain OS=Shewanella baltica (strain OS185) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM +ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB5 (ATP synthase gamma chain OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM +ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB2 (ATP synthase gamma chain OS=Shewanella baltica (strain OS223) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM +ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROMO (ATP synthase gamma chain, sodium ion specific OS=Propionigenium modestum GN=atpG PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            +FE     IL +++P Y+N Q+ +A+ E+ ASE +AR +AM  ATDNA+++ K+L++ YN+ERQA IT E+ EIV+GA AL
Sbjct:  202 IFEPSVEDILSSLLPKYLNIQLYQAILENTASEHSARKNAMKNATDNAEDMIKDLTLQYNRERQAAITQEISEIVSGASAL 282          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_CORJK2.921e-1556.25ATP synthase gamma chain OS=Corynebacterium jeikei... [more]
ATPG_ARTS22.921e-1548.89ATP synthase gamma chain OS=Arthrobacter sp. (stra... [more]
ATPG_ARTCA2.921e-1545.45ATP synthase gamma chain OS=Arthrobacter chlorophe... [more]
ATPG_AGRT52.921e-1550.00ATP synthase gamma chain OS=Agrobacterium tumefaci... [more]
ATPG_SHESH3.816e-1550.62ATP synthase gamma chain OS=Shewanella sediminis (... [more]
ATPG_SHEB93.816e-1550.62ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_SHEB83.816e-1550.62ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_SHEB53.816e-1550.62ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_SHEB23.816e-1550.62ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_PROMO3.816e-1549.38ATP synthase gamma chain, sodium ion specific OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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