CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MICLC (ATP synthase gamma chain OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  235 IVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 531
            +VE ++ T    ++ PL  +E D  ++LDA++P Y+ S+I  A+ +S ASE+A R  AM +A DNA  L K+ ++  N  RQA+IT EL E++AGA+AL
Sbjct:  198 VVEEEAATAE--DVLPLYEYEPDAEEVLDALLPKYIESRIFNAMLQSAASELANRQRAMKSAGDNATSLIKDYTLLMNNARQAEITQELTELIAGADAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E +  +IL A++P  +  QILRAL E+ ASE  ARMSAM +AT NA E+ K  ++ YN+ RQA IT EL+EI++GAEAL
Sbjct:  213 YEPEEGEILAALLPKNLTVQILRALLENAASEQGARMSAMDSATRNAGEMIKKQTLVYNRTRQAMITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HAEI8 (ATP synthase gamma chain OS=Haemophilus influenzae (strain 86-028NP) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E +P  +LD+++  Y+ SQI +A+ ++ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  209 LYEPEPKALLDSLLVRYLESQIYQAVVDNLASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSW (ATP synthase gamma chain OS=Geobacillus sp. (strain WCH70) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +ILD ++P Y  S I  AL ++ ASE AARM+AM  ATDNA EL + L+++YN+ RQA IT E+ EIVAGA AL
Sbjct:  205 FEPSQEEILDVLLPQYAESLIYGALLDAKASEHAARMTAMKNATDNAHELIRTLTLSYNRARQAAITQEITEIVAGANAL 284          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_FLAJ1 (ATP synthase gamma chain OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            +FE    +I+  ++P  + +Q+ + +++SFASE  ARM+AM  ATDNA EL+  L + YN+ RQA IT E+LEIV GAEAL
Sbjct:  204 IFEPSKEEIVLTLIPKSLKTQLYKGIRDSFASEHGARMTAMHKATDNATELRNQLKLTYNKARQAAITNEILEIVGGAEAL 284          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BARQU (ATP synthase gamma chain OS=Bartonella quintana GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = -1
Query:  235 KMIVERDSVTF----NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 537
            K  VE + VT     NK   S +  +E D A +L+ ++P  ++ QI +AL E+ A E+ A+++AM  A+ NA E+   L+VAYN++RQA+IT EL+EI+AGAEAL
Sbjct:  199 KGAVEAEDVTQKVDENKNLQSIVYDYEPDVASLLEELVPRNLSVQIFQALLENVAGEMGAKVTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACA2 (ATP synthase gamma chain OS=Bacillus amyloliquefaciens (strain FZB42) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D  ++L+ ++P Y  S I  AL +S ASE AARM+AM  ATDNA EL  +LS++YN+ RQA IT E+ EIV GA AL
Sbjct:  207 FEPDEEEVLEVLLPQYAESLIYGALLDSKASEHAARMTAMKNATDNAKELIDSLSLSYNRARQAAITQEITEIVGGAAAL 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_AERS4 (ATP synthase gamma chain OS=Aeromonas salmonicida (strain A449) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP Q+LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  208 IYEPDPKQLLDTLLIRYVESQVYQGVVENLASEQAARMVAMQAATDNAGNLINDLQLVYNKARQASITQELTEIVSGAAAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEFN (ATP synthase gamma chain OS=Shewanella frigidimarina (strain NCIMB 400) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP ++LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA E+  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEPDPKEVLDLLLTRYVESQVYQGVVENIASEQAARMVAMKAATDNAGEMIDDLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HAEIG (ATP synthase gamma chain OS=Haemophilus influenzae (strain PittGG) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E +P  +LD+++  Y+ SQI +A+ ++ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  209 LYEPEPKVLLDSLLVRYLESQIYQAVVDNLASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_MICLC3.816e-1543.43ATP synthase gamma chain OS=Micrococcus luteus (st... [more]
ATPG_METNO3.816e-1553.75ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_HAEI83.816e-1551.85ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_GEOSW3.816e-1555.00ATP synthase gamma chain OS=Geobacillus sp. (strai... [more]
ATPG_FLAJ13.816e-1549.38ATP synthase gamma chain OS=Flavobacterium johnson... [more]
ATPG_BARQU3.816e-1544.76ATP synthase gamma chain OS=Bartonella quintana GN... [more]
ATPG_BACA23.816e-1555.00ATP synthase gamma chain OS=Bacillus amyloliquefac... [more]
ATPG_AERS43.816e-1550.62ATP synthase gamma chain OS=Aeromonas salmonicida ... [more]
ATPG_SHEFN4.983e-1549.38ATP synthase gamma chain OS=Shewanella frigidimari... [more]
ATPG_HAEIG4.983e-1551.85ATP synthase gamma chain OS=Haemophilus influenzae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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