CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HAEIE (ATP synthase gamma chain OS=Haemophilus influenzae (strain PittEE) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E +P  +LD+++  Y+ SQI +A+ ++ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  209 LYEPEPKALLDSLLVRYLESQIYQAVVDNVASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_FLAPJ (ATP synthase gamma chain OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            +FE    +I+  ++P  + +Q+ + +++SFASE  ARM+AM  ATDNA EL+  L + YN+ RQA IT E+LEIV GAEAL
Sbjct:  204 IFEPSKEEIVLTLIPKSLKTQLYKGIRDSFASEHGARMTAMHKATDNATELRDQLKLTYNKARQAAITNEILEIVGGAEAL 284          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BARBK (ATP synthase gamma chain OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E D A +L+ ++P +++ QI +AL E+ A E+ A+MSAM  A+ NA E+   L+V YN++RQA+IT EL+EI+AGAEAL
Sbjct:  223 YEPDVASLLNDLIPRHISVQIFQALLENVAGEMGAKMSAMDNASRNAGEMINKLTVTYNRQRQAQITTELIEIIAGAEAL 302          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHESW (ATP synthase gamma chain OS=Shewanella sp. (strain W3-18-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEPDPKVLLDTLLVRYIESQVYQGVVENIASEQAARMVAMKAATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEPC (ATP synthase gamma chain OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEPDPKVLLDTLLVRYIESQVYQGVVENIASEQAARMVAMKAATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHELP (ATP synthase gamma chain OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP ++L+ ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 LYEPDPKELLETLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGELIDDLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEAM (ATP synthase gamma chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++EQDP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEQDPKDLLDTLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGTLIDDLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROMH (ATP synthase gamma chain OS=Proteus mirabilis (strain HI4320) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ +++ E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKTLLDTLLRRYIESQVYQSVVENLASEQAARMVAMKAATDNGGNLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PECCP (ATP synthase gamma chain OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV GA A+
Sbjct:  207 LYEPDPKSLLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HAEIN (ATP synthase gamma chain OS=Haemophilus influenzae GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E +P  +LD+++  Y+ SQI +A+ ++ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  209 LYEPEPKVLLDSLLVRYLESQIYQAVVDNVASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_HAEIE4.983e-1551.85ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_FLAPJ4.983e-1549.38ATP synthase gamma chain OS=Flavobacterium psychro... [more]
ATPG_BARBK4.983e-1550.00ATP synthase gamma chain OS=Bartonella bacilliform... [more]
ATPG_SHESW6.508e-1550.62ATP synthase gamma chain OS=Shewanella sp. (strain... [more]
ATPG_SHEPC6.508e-1550.62ATP synthase gamma chain OS=Shewanella putrefacien... [more]
ATPG_SHELP6.508e-1550.62ATP synthase gamma chain OS=Shewanella loihica (st... [more]
ATPG_SHEAM6.508e-1550.62ATP synthase gamma chain OS=Shewanella amazonensis... [more]
ATPG_PROMH6.508e-1550.62ATP synthase gamma chain OS=Proteus mirabilis (str... [more]
ATPG_PECCP6.508e-1550.62ATP synthase gamma chain OS=Pectobacterium carotov... [more]
ATPG_HAEIN6.508e-1551.85ATP synthase gamma chain OS=Haemophilus influenzae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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