CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP8 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 8801) GN=atpG PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.063e-29
Identity = 63/112 (56.25%), Postives = 87/112 (77.68%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRL T +GK+ VER+++          M+FEQDP QILDA++PLY+N+Q+LR LQE+ ASE+AARM+AMS A+DNA +L   L+++YN+ RQA IT +L+E+VAGA AL
Sbjct:  203 DEVFRLITRDGKLRVERETIAQEVSSFPQDMIFEQDPIQILDALLPLYINNQLLRGLQEAAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQQLMEVVAGANAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ACAM1 (ATP synthase gamma chain OS=Acaryochloris marina (strain MBIC 11017) GN=atpG PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.351e-28
Identity = 67/113 (59.29%), Postives = 88/113 (77.88%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT  G+  VER+ +     +  P  M+FEQ+P QILDA++PLY+N+Q+LRALQES ASE+AARM+AM+ A+DNA EL   L+++YN+ RQA IT ELLE+V GAEAL
Sbjct:  204 DEVFRLTTRGGQFQVERERMERGTPQEMPSDMIFEQNPIQILDALLPLYLNNQLLRALQESAASELAARMTAMNNASDNASELIGTLTLSYNKARQAAITQELLEVVGGAEAL 316          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROMT (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL2A) GN=atpG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.704e-28
Identity = 61/112 (54.46%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE+FRLTT + ++I+E+D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA EL KNL++ YN+ RQA IT E+LE+V GA A
Sbjct:  205 DEIFRLTTKDSQLIIEKDAAPSNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROM1 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL1A) GN=atpG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.704e-28
Identity = 61/112 (54.46%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE+FRLTT + ++I+E+D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA EL KNL++ YN+ RQA IT E+LE+V GA A
Sbjct:  205 DEIFRLTTKDSQLIIEKDAAPTNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP2 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.756e-28
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE F L T  GK  VER+ V     EL   M+FEQDP  IL+A++PLY+++Q+LRALQE  ASE+AARM+AM+ A+DNA +L K L+++YN+ RQA IT EL E+VAGA AL
Sbjct:  203 DETFNLITRGGKFQVEREKVATEVKELPADMIFEQDPKDILNALLPLYLSNQLLRALQEGAASELAARMTAMNNASDNASDLMKTLTLSYNKARQAAITQELSEVVAGANAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SPIPL (ATP synthase gamma chain OS=Spirulina platensis GN=atpG PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.144e-27
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLT+  GK  V R+ V+     L+  M+FEQDP +IL+A++PL++ +Q+LRA QES ASE+AARM+AMS A+DNA +L K L+++YN+ RQA IT ELLE+VAGA
Sbjct:  203 DEVFRLTSKGGKFDVTREKVSVEPEALAQDMIFEQDPVEILNALLPLFLTNQLLRAWQESTASELAARMTAMSNASDNASDLVKTLTLSYNKARQASITQELLEVVAGA 311          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNY3 (ATP synthase gamma chain OS=Synechocystis sp. (strain PCC 6803) GN=atpG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.493e-27
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRL T  GK  VER+ V          M+FEQDP QIL+A++PLY  +Q+LRALQES ASE+AARM+AMS A+DNA +L   L+++YN+ RQA IT ELLE+VAGA +L
Sbjct:  203 DEIFRLITRGGKFQVEREKVEAPVESFPQDMIFEQDPVQILEALLPLYNTNQLLRALQESAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQELLEVVAGANSL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_TRIEI (ATP synthase gamma chain OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.675e-27
Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLT+  G+  V R++V+         M+FEQDP QILDA++PL++ +Q+LRA QES ASE+A+RM+AMS A+DNA EL   L++AYN+ RQA IT E+LE+V GA AL
Sbjct:  203 DEIFRLTSKGGEFEVSRETVSAAVKSFPRDMIFEQDPIQILDALLPLFLTNQLLRAWQESSASELASRMTAMSNASDNASELAGTLTLAYNKARQAAITQEILEVVGGANAL 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNR3 (ATP synthase gamma chain OS=Synechococcus sp. (strain RCC307) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.675e-27
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FR  T EG++ VER S +  + +L   ++FEQ P+Q+LD ++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+V GA A+
Sbjct:  203 DEIFRFVTKEGELGVERSSASNQEDKLKSDLVFEQSPSQLLDVLLPLYLQNQVLRSLQESAASELASRMTAMNNASDNAKALAKELTLDYNKARQAAITQEILEVVGGASAM 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROM4 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9211) GN=atpG PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.157e-26
Identity = 58/112 (51.79%), Postives = 86/112 (76.79%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE+FRLTT   +++VE+D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V G+ +
Sbjct:  205 DEMFRLTTKNSRLVVEKDAAPSNEQPKLPSDVVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKTLNLTYNKARQAAITQEILEVVGGSSS 316          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_CYAP86.063e-2956.25ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_ACAM11.351e-2859.29ATP synthase gamma chain OS=Acaryochloris marina (... [more]
ATPG_PROMT6.704e-2854.46ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM16.704e-2854.46ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNP28.756e-2857.14ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SPIPL1.144e-2756.88ATP synthase gamma chain OS=Spirulina platensis GN... [more]
ATPG_SYNY31.493e-2758.04ATP synthase gamma chain OS=Synechocystis sp. (str... [more]
ATPG_TRIEI5.675e-2755.36ATP synthase gamma chain OS=Trichodesmium erythrae... [more]
ATPG_SYNR35.675e-2751.79ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROM42.157e-2651.79ATP synthase gamma chain OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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