CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROMA (ATP synthase gamma chain OS=Prochlorococcus marinus GN=atpG PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25
Identity = 55/110 (50.00%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FR+TT   + ++E+D    N+  + P  ++FEQ P Q+L++++PLY+ +Q+LRALQE+ ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V GA
Sbjct:  205 DEIFRITTKGSRFVIEKDPAPANEEPVLPSDVVFEQSPDQLLNSLLPLYLQNQLLRALQEAAASELASRMTAMNNASDNAKELAKTLNLTYNKARQAAITQEILEVVGGA 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS9 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9902) GN=atpG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.183e-24
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE+F LTT++G++ VE  + + N     P  ++FEQ P Q+L+A++PLY+ +Q+LR LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V G+ A
Sbjct:  203 DEIFNLTTDQGRLTVEPGTSSANTAPKIPSDIVFEQSPDQLLNALLPLYLQNQLLRCLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAA 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNPX (ATP synthase gamma chain OS=Synechococcus sp. (strain WH8102) GN=atpG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.183e-24
Identity = 58/113 (51.33%), Postives = 84/113 (74.34%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT +G++ VE  +   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGRLTVEPGAGPANTEPKIPSDIVFEQTPEQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNSC (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9605) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT +G + VE  +   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGLLTVEPGAGPANTEPKIPSDIVFEQTPEQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_GLOVI (ATP synthase gamma chain OS=Gloeobacter violaceus GN=atpG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.670e-24
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFN-KGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE F+L T  G   V R+      + E +   +FEQDP Q+LDA++PLY+ S++L ALQES ASE+AARM+AMS A+DNA +L   L++ YN+ RQA IT E+LE+V+GA A
Sbjct:  203 DETFKLITKGGGFEVLREKQQVRTEPEFAADTIFEQDPTQLLDALLPLYLTSEVLHALQESSASELAARMTAMSAASDNAKKLLSTLTIVYNKARQASITQEILEVVSGANA 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROMM (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9313) GN=atpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT + ++ VE+     N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROM3 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9303) GN=atpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT + ++ VE+     N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_VIGUN (ATP synthase subunit gamma, chloroplastic (Fragment) OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:  346 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTA 570
            DE FRLTT EGK+ VERD V     + SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS A
Sbjct:   42 DEFFRLTTKEGKLTVERDVVRTKTTDYSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNA 116          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PELPB (ATP synthase gamma chain OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = -1
Query:  232 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 495
            E S   ++E  P+ I+D ++P ++N+QI R + ES A+E AARMSAM +AT+NA EL + L+++YN+ RQA IT EL EIV+GA+ALT
Sbjct:  203 ESSSDYIYEPSPSAIIDELVPKHLNTQIWRMMLESSAAEQAARMSAMDSATENAKELMRTLNISYNRARQAAITTELSEIVSGADALT 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROA2 (ATP synthase gamma chain OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 44/81 (54.32%), Postives = 63/81 (77.78%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E  PA I+D ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGAEAL
Sbjct:  209 IYEPSPASIIDVLVPKHLNTQVWRMMLESNAAEQAARMAAMDSATENAKELLRLLNISYNRARQAAITTELSEIVAGAEAL 289          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_PROMA3.114e-2550.00ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNS91.183e-2450.89ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNPX1.183e-2451.33ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNSC3.443e-2451.33ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_GLOVI7.670e-2451.79ATP synthase gamma chain OS=Gloeobacter violaceus ... [more]
ATPG_PROMM1.308e-2350.91ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM31.308e-2350.91ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_VIGUN1.889e-2270.67ATP synthase subunit gamma, chloroplastic (Fragmen... [more]
ATPG_PELPB6.289e-1852.27ATP synthase gamma chain OS=Pelodictyon phaeoclath... [more]
ATPG_PROA21.830e-1754.32ATP synthase gamma chain OS=Prosthecochloris aestu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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