CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  235 LFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L++ +P++  IL  ++P  + +QI  AL E+ ASE  ARMSAM  AT NA ++ + L++ YN+ RQA IT EL+EI++GAEAL
Sbjct:  208 LYDYEPSEEAILADLLPRGVATQIFAALLENGASEQGARMSAMDNATRNAGDMIERLTIEYNRSRQAVITNELIEIISGAEAL 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CALS8 (ATP synthase gamma chain OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  235 KMIVERDSVTFNKGELSP--LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 537
            K ++  D   F  GE      + +E  P  +LD ++  Y+   I  A+ +S+ SE+AARM+AM  AT +ADE+ + L +  N+ERQA IT E+ EI++GA AL
Sbjct:  189 KKLLPLDPSEFVSGEFKKDETIRYEPSPTNVLDVVIYEYLKGIIFGAMMDSYVSELAARMTAMDNATKSADEMIQKLVLKLNRERQAVITQEISEIISGAAAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XYLFA (ATP synthase gamma chain OS=Xylella fastidiosa GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA++L   L + YN+ RQA IT E+ EIV GA A+
Sbjct:  207 LYEPDAATVLEHVMRRYIESLVYQAMLENIASEHAARMVAMKAASDNANKLIGTLQLVYNKARQAAITQEISEIVGGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNFM (ATP synthase gamma chain OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  235 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 501
            KG L    LFE     +L  ++P Y+  +IL +L ++   E AARM+AM  AT N  EL K L++ YN+ RQA IT EL++IV GAEAL
Sbjct:  204 KGRLE--YLFEPSHEALLTDLLPNYVFIEILESLYQTAVGEHAARMAAMENATSNCKELVKTLTLTYNKARQAGITKELMDIVGGAEAL 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAW (ATP synthase gamma chain OS=Staphylococcus aureus (strain MW2) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAT (ATP synthase gamma chain OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAS (ATP synthase gamma chain OS=Staphylococcus aureus (strain MSSA476) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAR (ATP synthase gamma chain OS=Staphylococcus aureus (strain MRSA252) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAN (ATP synthase gamma chain OS=Staphylococcus aureus (strain N315) GN=atpG PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAM (ATP synthase gamma chain OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=atpG PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_DINSH7.956e-1348.19ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_CALS87.956e-1339.81ATP synthase gamma chain OS=Caldicellulosiruptor s... [more]
ATPG_XYLFA1.039e-1248.15ATP synthase gamma chain OS=Xylella fastidiosa GN=... [more]
ATPG_SYNFM1.039e-1247.19ATP synthase gamma chain OS=Syntrophobacter fumaro... [more]
ATPG_STAAW1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAAT1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAAS1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAAR1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAAN1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAAM1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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