CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAE (ATP synthase gamma chain OS=Staphylococcus aureus (strain Newman) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAC (ATP synthase gamma chain OS=Staphylococcus aureus (strain COL) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAAB (ATP synthase gamma chain OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAA9 (ATP synthase gamma chain OS=Staphylococcus aureus (strain JH9) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAA2 (ATP synthase gamma chain OS=Staphylococcus aureus (strain JH1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAA1 (ATP synthase gamma chain OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A RM+AM  ATDNA EL  +LS+ YN+ RQA+IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RICAE (ATP synthase gamma chain OS=Rickettsia africae (strain ESF-5) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E + A ++  ++ LY+NSQI  AL +S ASE  ARM+AM  AT+NA++L   L +  N+ RQA IT EL+EI+AG+EA+
Sbjct:  244 YEYEGASLISNLINLYVNSQINYALLQSRASEEGARMTAMENATNNANDLISKLVLKLNRSRQAIITTELIEIIAGSEAV 323          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PSYWF (ATP synthase gamma chain OS=Psychrobacter sp. (strain PRwf-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  232 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 495
            ELS   ++E D   ++D ++  Y+ S + +A+ E+ ASE +ARM AM  ATDNA +L  +L + YN+ RQA IT E+ EIV GA A++
Sbjct:  206 ELSWDYIYEPDVKTLIDGLLNRYIESIVYQAVMENIASEQSARMVAMKAATDNAGDLINDLQLVYNKLRQAAITREISEIVGGAAAVS 293          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PHEZH (ATP synthase gamma chain OS=Phenylobacterium zucineum (strain HLK1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E D  QIL+ ++P  + +Q+L A  E+ A   AA+M+AM  AT NA ++  +L++ YN+ RQA+IT EL+EI++GAEAL
Sbjct:  211 YEPDEEQILETLLPRNVTTQLLSATLENQAGFYAAQMTAMDNATRNAGDMIASLTLQYNRSRQAQITKELIEIISGAEAL 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCA9 (ATP synthase gamma chain OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   +  A++P Y+ +++  AL E+ ASE A+R  AM  ATDNADEL K L++  N  RQA+IT E+ EIV G  AL
Sbjct:  223 FEPDATTLFGALLPRYLATRVYAALLEAAASESASRRRAMKAATDNADELIKGLTLEANGARQAQITQEISEIVGGVNAL 302          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_STAAE1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAAC1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAAB1.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAA91.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAA21.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_STAA11.039e-1248.75ATP synthase gamma chain OS=Staphylococcus aureus ... [more]
ATPG_RICAE1.039e-1248.75ATP synthase gamma chain OS=Rickettsia africae (st... [more]
ATPG_PSYWF1.039e-1244.32ATP synthase gamma chain OS=Psychrobacter sp. (str... [more]
ATPG_PHEZH1.039e-1246.25ATP synthase gamma chain OS=Phenylobacterium zucin... [more]
ATPG_MYCA91.039e-1248.75ATP synthase gamma chain OS=Mycobacterium abscessu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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