CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_FRASC (ATP synthase gamma chain OS=Frankia sp. (strain CcI3) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  235 PLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 486
            PL  +E +P+   +LDA++P Y+ S++  AL ES ASE AAR  AM +ATDNA++L K  +   N+ RQ  IT E+ EIV GA AL
Sbjct:  209 PLPQYEFEPSAEGVLDALLPRYVESRLYAALLESAASESAARQRAMKSATDNAEDLIKRYTRQANRARQDAITQEISEIVGGANAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_DIAST (ATP synthase gamma chain OS=Diaphorobacter sp. (strain TPSY) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   ++D ++  Y+ S I +A+ E+ ASE +ARM AM  ATDNA  +   L + YN+ RQA IT EL EIVAGA A+
Sbjct:  208 IYEPDAQSVIDELLVRYVESLIYQAVAENMASEQSARMVAMKAATDNAGNVINELKLVYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BIFAA (ATP synthase gamma chain OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  229 SPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 489
            +PL  FE    ++LDA++P Y+ S+I   L  + ASE A+R +AM TATDNA  L   L+   N  RQA IT EL EI+  A+AL +
Sbjct:  217 TPLYAFEPSVDEVLDAILPKYIQSRIHECLLTAAASETASRQNAMHTATDNARSLIDELTRKLNASRQASITQELTEIIGSADALNK 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ACISJ (ATP synthase gamma chain OS=Acidovorax sp. (strain JS42) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   ++D ++  Y+ S I +A+ E+ ASE +ARM AM  ATDNA  +   L + YN+ RQA IT EL EIVAGA A+
Sbjct:  208 IYEPDAQSVIDELLVRYVESLIYQAVAENMASEQSARMVAMKAATDNAGNVINELKLVYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANOR (ATP synthase gamma chain OS=Xanthomonas oryzae pv. oryzae GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANOP (ATP synthase gamma chain OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANOM (ATP synthase gamma chain OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANAC (ATP synthase gamma chain OS=Xanthomonas axonopodis pv. citri GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_THISH (ATP synthase gamma chain OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   +LD ++  Y+ S + + + E+ A E+AARM AM +A+DNA +L K L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  206 IYEPDAKPVLDTLLTRYIESVVYQGVVENVACEMAARMVAMKSASDNAGDLIKELQLVYNKARQAAITQEISEIVSGAAAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MARMS (ATP synthase gamma chain OS=Marinomonas sp. (strain MWYL1) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E +  +ILD ++  Y+ SQ+ +++ E+ A E AARM AM  ATDNA ++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  206 IYEPEAVEILDELLVRYIESQVYQSVVENIACEQAARMLAMKNATDNAGDIIDELQLVYNKARQAAITQEISEIVSGAAAV 286          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_FRASC1.039e-1248.84ATP synthase gamma chain OS=Frankia sp. (strain Cc... [more]
ATPG_DIAST1.039e-1246.91ATP synthase gamma chain OS=Diaphorobacter sp. (st... [more]
ATPG_BIFAA1.039e-1245.98ATP synthase gamma chain OS=Bifidobacterium adoles... [more]
ATPG_ACISJ1.039e-1246.91ATP synthase gamma chain OS=Acidovorax sp. (strain... [more]
ATPG_XANOR1.357e-1246.91ATP synthase gamma chain OS=Xanthomonas oryzae pv.... [more]
ATPG_XANOP1.357e-1246.91ATP synthase gamma chain OS=Xanthomonas oryzae pv.... [more]
ATPG_XANOM1.357e-1246.91ATP synthase gamma chain OS=Xanthomonas oryzae pv.... [more]
ATPG_XANAC1.357e-1246.91ATP synthase gamma chain OS=Xanthomonas axonopodis... [more]
ATPG_THISH1.357e-1244.44ATP synthase gamma chain OS=Thioalkalivibrio sp. (... [more]
ATPG_MARMS1.357e-1244.44ATP synthase gamma chain OS=Marinomonas sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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