CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HELAH (ATP synthase gamma chain OS=Helicobacter acinonychis (strain Sheeba) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = -1
Query:  235 QILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 456
            +ILD++   Y+   +  AL +S A+E +ARM AM TAT+NA +L KNL+++YN+ RQ  IT EL+EI AG EAL
Sbjct:  227 EILDSLAKKYVEYSLYYALIDSLAAEHSARMQAMDTATNNAKDLVKNLTISYNKARQEAITTELVEINAGVEAL 300          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CLOPS (ATP synthase gamma chain OS=Clostridium perfringens (strain SM101 / Type A) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  238 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 513
            +T  KG++S   L E D  +I+D+++  Y+  + + A+  S ASE +ARM AM  AT NAD+L  +L   YN+ RQ+ IT E+ EIV GAEA
Sbjct:  192 LTGEKGKVS--FLIEPDEDEIIDSLVSSYLKGKFMNAMFNSKASEQSARMQAMDGATKNADDLLNSLDAKYNRIRQSIITQEISEIVGGAEA 281          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CLOPE (ATP synthase gamma chain OS=Clostridium perfringens GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  238 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 513
            +T  KG++S   L E D  +I+D+++  Y+  + + A+  S ASE +ARM AM  AT NAD+L  +L   YN+ RQ+ IT E+ EIV GAEA
Sbjct:  192 LTGEKGKVS--FLIEPDEDEIIDSLVSSYLKGKFMNAMFNSKASEQSARMQAMDGATKNADDLLNSLDAKYNRIRQSIITQEISEIVGGAEA 281          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CLOP1 (ATP synthase gamma chain OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  238 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 513
            +T  KG++S   L E D  +I+D+++  Y+  + + A+  S ASE +ARM AM  AT NAD+L  +L   YN+ RQ+ IT E+ EIV GAEA
Sbjct:  192 LTGEKGKVS--FLIEPDEDEIIDSLVSSYLKGKFMNAMFNSKASEQSARMQAMDGATKNADDLLNSLDAKYNRIRQSIITQEISEIVGGAEA 281          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHRSD (ATP synthase gamma chain OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D   +LD ++  Y+ SQ+ +A+ E+ A E AARM AM  ATDNA  L  +L + YN+ RQA IT E+ EIV GA A+
Sbjct:  212 LYEPDAKTLLDHLLVRYVESQVYQAVVENAACEQAARMIAMKNATDNAGNLIDDLELVYNKARQAAITQEISEIVGGAAAV 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ALISL (ATP synthase gamma chain OS=Aliivibrio salmonicida (strain LFI1238) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E +P  +LDA++  Y+ SQ+ + + E+ A E  ARM AM  ATDNA ++   L + YN+ RQ+ IT EL EIV+GA A+
Sbjct:  208 IYEPEPKPLLDALLIRYVESQVYQGVVENLACEHVARMIAMKAATDNAGDIIDELQLVYNKARQSAITQELSEIVSGASAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANCP (ATP synthase gamma chain OS=Xanthomonas campestris pv. campestris GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAATVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANCB (ATP synthase gamma chain OS=Xanthomonas campestris pv. campestris (strain B100) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAATVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANC8 (ATP synthase gamma chain OS=Xanthomonas campestris pv. campestris (strain 8004) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAATVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANC5 (ATP synthase gamma chain OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D A +L+ +M  Y+ S + +A+ E+ ASE AARM AM  A+DNA+++   L + YN+ RQA IT E+ EIV+GA A+
Sbjct:  207 LYEPDAATVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_HELAH1.357e-1251.35ATP synthase gamma chain OS=Helicobacter acinonych... [more]
ATPG_CLOPS1.357e-1244.57ATP synthase gamma chain OS=Clostridium perfringen... [more]
ATPG_CLOPE1.357e-1244.57ATP synthase gamma chain OS=Clostridium perfringen... [more]
ATPG_CLOP11.357e-1244.57ATP synthase gamma chain OS=Clostridium perfringen... [more]
ATPG_CHRSD1.357e-1248.15ATP synthase gamma chain OS=Chromohalobacter salex... [more]
ATPG_ALISL1.357e-1244.44ATP synthase gamma chain OS=Aliivibrio salmonicida... [more]
ATPG_XANCP1.772e-1246.91ATP synthase gamma chain OS=Xanthomonas campestris... [more]
ATPG_XANCB1.772e-1246.91ATP synthase gamma chain OS=Xanthomonas campestris... [more]
ATPG_XANC81.772e-1246.91ATP synthase gamma chain OS=Xanthomonas campestris... [more]
ATPG_XANC51.772e-1246.91ATP synthase gamma chain OS=Xanthomonas campestris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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