CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNAS (ATP synthase gamma chain OS=Syntrophus aciditrophicus (strain SB) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  229 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 474
            +E    +++  ++P+Y++  I RAL E+ A E  ARM+AM  AT N DE+   L++ YN+ RQ+ IT EL++IV G EAL +
Sbjct:  209 YEPSDEELIGKLLPMYIHVLIFRALLETSAGENGARMAAMDNATRNCDEMISTLTLQYNKVRQSAITAELMDIVGGTEALAK 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STRTR (ATP synthase gamma chain OS=Streptococcus thermophilus GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  235 NKGELSPLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            N+ E   L  FE +P +  ILD ++P Y  S I  A+ ++  +E AA M+AM TATDNA ++  +L++ YN+ RQA IT E+ EIV GA AL
Sbjct:  200 NESEGHVLTKFELEPDRDTILDQLLPQYAESLIYGAIVDAKTAEHAAGMTAMQTATDNAKKIINDLTIQYNRARQAAITQEITEIVGGASAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STRTD (ATP synthase gamma chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  235 NKGELSPLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            N+ E   L  FE +P +  ILD ++P Y  S I  A+ ++  +E AA M+AM TATDNA ++  +L++ YN+ RQA IT E+ EIV GA AL
Sbjct:  200 NESEGHVLTKFELEPDRDTILDQLLPQYAESLIYGAIVDAKTAEHAAGMTAMQTATDNAKKIINDLTIQYNRARQAAITQEITEIVGGASAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STRT2 (ATP synthase gamma chain OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  235 NKGELSPLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            N+ E   L  FE +P +  ILD ++P Y  S I  A+ ++  +E AA M+AM TATDNA ++  +L++ YN+ RQA IT E+ EIV GA AL
Sbjct:  200 NESEGHVLTKFELEPDRDTILDQLLPQYAESLIYGAIVDAKTAEHAAGMTAMQTATDNAKKIINDLTIQYNRARQAAITQEITEIVGGASAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STRT1 (ATP synthase gamma chain OS=Streptococcus thermophilus (strain CNRZ 1066) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  235 NKGELSPLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            N+ E   L  FE +P +  ILD ++P Y  S I  A+ ++  +E AA M+AM TATDNA ++  +L++ YN+ RQA IT E+ EIV GA AL
Sbjct:  200 NESEGHVLTKFELEPDRDTILDQLLPQYAESLIYGAIVDAKTAEHAAGMTAMQTATDNAKKIINDLTIQYNRARQAAITQEITEIVGGASAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CLOTH (ATP synthase gamma chain OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  235 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 480
            M +E DP  + + ++  Y+   +  A  ESF SE  +RM+AM  AT NA+++ K L + YN+ RQ+KIT ++ EIV GAEAL
Sbjct:  213 MEYEPDPEYVFNVLVRKYIKGVVYGAFVESFTSEQNSRMTAMDNATANANDMLKKLDLLYNRARQSKITQDITEIVGGAEAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLAD (ATP synthase gamma chain OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E     +L++++P Y+ +QI +A+ ES ASE +ARM AM  AT+NA +L ++L++++N+ RQA IT E+ EI +GA AL
Sbjct:  209 YEPSEEDVLNSILPRYVETQIYQAVLESIASEHSARMVAMRNATNNAKDLVRDLTLSFNKARQAAITKEVSEIASGAAAL 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_AZOSE (ATP synthase gamma chain OS=Azoarcus sp. (strain EbN1) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  ++D M+  Y+ + + +A+ E+ ASE +ARM AM  A+DNA  +   L + YN+ RQA IT EL EIV+GA A+
Sbjct:  209 LYEPDPQVVIDEMLVRYVEALVYQAVAENMASEQSARMVAMKAASDNAKNVIGELQLVYNKTRQAAITKELSEIVSGAAAV 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SALAI (ATP synthase gamma chain OS=Salinispora arenicola (strain CNS-205) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  235 LSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 492
            L P   FE +   +LDA++P Y+N++I  AL ES ASE A+R  AM +A DNA E+ +  +   N  RQA IT E+ EIV GA AL
Sbjct:  217 LLPAYEFEPEAEALLDALLPKYINTRIYAALVESAASESASRRRAMKSANDNAVEMIEKYTREMNSARQAGITQEISEIVGGANAL 302          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PSEHT (ATP synthase gamma chain OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E +P  IL+A++  ++ SQ+ + + E+ ASE AARM AM  ATDNA +L   L + YN+ RQA IT E+ EI +G+ A+
Sbjct:  206 LYEPNPDAILEALLVRFVESQVYQGVVENAASEQAARMVAMKAATDNAGDLMDELQLIYNKARQAAITQEISEICSGSAAV 286          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_SYNAS1.772e-1242.68ATP synthase gamma chain OS=Syntrophus aciditrophi... [more]
ATPG_STRTR1.772e-1245.65ATP synthase gamma chain OS=Streptococcus thermoph... [more]
ATPG_STRTD1.772e-1245.65ATP synthase gamma chain OS=Streptococcus thermoph... [more]
ATPG_STRT21.772e-1245.65ATP synthase gamma chain OS=Streptococcus thermoph... [more]
ATPG_STRT11.772e-1245.65ATP synthase gamma chain OS=Streptococcus thermoph... [more]
ATPG_CLOTH1.772e-1243.90ATP synthase gamma chain OS=Clostridium thermocell... [more]
ATPG_CHLAD1.772e-1245.00ATP synthase gamma chain OS=Chloroflexus aggregans... [more]
ATPG_AZOSE1.772e-1245.68ATP synthase gamma chain OS=Azoarcus sp. (strain E... [more]
ATPG_SALAI2.315e-1247.67ATP synthase gamma chain OS=Salinispora arenicola ... [more]
ATPG_PSEHT2.315e-1245.68ATP synthase gamma chain OS=Pseudoalteromonas halo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
back to top