CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_LARHH (ATP synthase gamma chain OS=Laribacter hongkongensis (strain HLHK9) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D   +LD ++  Y+ S + +A+ E+ ASE +ARM AM  ATDNA +  + L + YN+ RQA IT EL EI AGA A+
Sbjct:  208 LYEPDVRGVLDVLVRRYLESVVYQAVSENMASEQSARMVAMKAATDNAAQAIERLKLTYNKARQAAITTELSEICAGAAAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_EXIS2 (ATP synthase gamma chain OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  238 ELSPLMLFEQDPA--QILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 495
            E S    +E +P+  QIL  ++P Y  S I  AL ++  +E A+RM+AM +ATDNAD+L   L++ YN+ RQA IT E+ EIV+GA A
Sbjct:  194 EASSSTTYEYEPSEEQILAELLPRYAESLIFGALLDAKVAEHASRMTAMQSATDNADDLIGRLTLVYNRARQAAITQEITEIVSGAAA 281          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_DELAS (ATP synthase gamma chain OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   ++D ++  Y  S + +A+ E+ ASE +ARM AM  ATDNA  +   L + YN+ RQA IT EL EIVAGA A+
Sbjct:  210 IYEPDAQSVIDELLVRYAESLVYQAVAENMASEQSARMVAMKAATDNAGNVISELKLVYNKTRQAAITTELSEIVAGAAAV 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BLOPB (ATP synthase gamma chain OS=Blochmannia pennsylvanicus (strain BPEN) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E D   +L++++  Y+ SQ+ + + E+ ASE +ARM AM TA+DN + +  +L + YN+ RQ KIT EL EIV+GA  +
Sbjct:  208 LYEPDSKVLLNSLLQRYIESQVYQGVVENLASEQSARMMAMKTASDNGEVIINDLKLFYNKARQTKITEELTEIVSGASVI 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACHK (ATP synthase gamma chain OS=Bacillus thuringiensis subsp. konkukian GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACCZ (ATP synthase gamma chain OS=Bacillus cereus (strain ZK / E33L) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACCR (ATP synthase gamma chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACC7 (ATP synthase gamma chain OS=Bacillus cereus (strain AH187) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACC4 (ATP synthase gamma chain OS=Bacillus cereus (strain B4264) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACC3 (ATP synthase gamma chain OS=Bacillus cereus (strain 03BB102) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_LARHH2.315e-1246.91ATP synthase gamma chain OS=Laribacter hongkongens... [more]
ATPG_EXIS22.315e-1246.59ATP synthase gamma chain OS=Exiguobacterium sibiri... [more]
ATPG_DELAS2.315e-1245.68ATP synthase gamma chain OS=Delftia acidovorans (s... [more]
ATPG_BLOPB2.315e-1243.21ATP synthase gamma chain OS=Blochmannia pennsylvan... [more]
ATPG_BACHK2.315e-1248.75ATP synthase gamma chain OS=Bacillus thuringiensis... [more]
ATPG_BACCZ2.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]
ATPG_BACCR2.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]
ATPG_BACC72.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]
ATPG_BACC42.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]
ATPG_BACC32.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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