CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACC2 (ATP synthase gamma chain OS=Bacillus cereus (strain G9842) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACC1 (ATP synthase gamma chain OS=Bacillus cereus (strain ATCC 10987) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACC0 (ATP synthase gamma chain OS=Bacillus cereus (strain AH820) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACAN (ATP synthase gamma chain OS=Bacillus anthracis GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACAH (ATP synthase gamma chain OS=Bacillus thuringiensis (strain Al Hakam) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACAC (ATP synthase gamma chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACAA (ATP synthase gamma chain OS=Bacillus anthracis (strain A0248) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+  +L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDSLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ACIAC (ATP synthase gamma chain OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   ++D ++  Y+ S I +A+ E+ ASE +ARM AM  ATDNA  +   L + YN+ RQA IT EL EIVAGA A+
Sbjct:  208 IYEPDAQSVIDDLLVRYVESLIYQAVAENMASEQSARMVAMKAATDNAGNVIGELKLVYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SULDN (ATP synthase gamma chain OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  235 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 495
            E S L +  QD  ++LD+++  Y    +  +L +S A+E +ARM AM TAT+NA E+ K+L+V +N+ RQA IT EL+EI++G E++
Sbjct:  208 EKSMLEVEAQDEEKMLDSLVNRYAQYAMYYSLIDSVAAEHSARMQAMDTATNNAKEMVKSLNVQFNKARQAAITTELIEIISGVESM 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SPHAL (ATP synthase gamma chain OS=Sphingopyxis alaskensis GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E    +IL  ++P  +  QI + L E+ ASE  A M+AM  AT NA EL   L++ YN+ RQA IT EL+EI+AGAEAL
Sbjct:  212 YEPGEEEILADLLPRNVTIQIFKGLLENAASEQGASMTAMDNATRNAGELINKLTIIYNRTRQAAITTELIEIIAGAEAL 291          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_BACC22.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]
ATPG_BACC12.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]
ATPG_BACC02.315e-1248.75ATP synthase gamma chain OS=Bacillus cereus (strai... [more]
ATPG_BACAN2.315e-1248.75ATP synthase gamma chain OS=Bacillus anthracis GN=... [more]
ATPG_BACAH2.315e-1248.75ATP synthase gamma chain OS=Bacillus thuringiensis... [more]
ATPG_BACAC2.315e-1248.75ATP synthase gamma chain OS=Bacillus anthracis (st... [more]
ATPG_BACAA2.315e-1248.75ATP synthase gamma chain OS=Bacillus anthracis (st... [more]
ATPG_ACIAC2.315e-1246.91ATP synthase gamma chain OS=Acidovorax avenae subs... [more]
ATPG_SULDN3.023e-1243.68ATP synthase gamma chain OS=Sulfurimonas denitrifi... [more]
ATPG_SPHAL3.023e-1248.75ATP synthase gamma chain OS=Sphingopyxis alaskensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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