CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RUBXD (ATP synthase gamma chain OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            F  D   IL  ++P Y+ + + +AL ES A E  ARM+AM  ATDNA+EL   L++  N+ RQA+IT E+ EI AGAEAL
Sbjct:  208 FIPDADTILRRLIPQYVETLVWQALLESAAGEHGARMTAMKNATDNANELVDTLTLQMNKARQAQITREISEIAAGAEAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_POLNA (ATP synthase gamma chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  235 DSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 519
            D +  +K E S   ++E D   ++D ++  Y+ + + +A+ E+ ASE +ARM AM +ATDNA  +   L + YN+ RQA IT EL EIVAGA A+
Sbjct:  194 DRMQPDKTEHSWDYIYEPDAQTVIDELLVRYVEALVFQAVAENMASEQSARMVAMKSATDNAGSVIGELKLIYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MESFL (ATP synthase gamma chain OS=Mesoplasma florum GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    ++L+  + LY+++ I   + ES  SE A+R  AM  AT+N  EL+ NLS+ YN+ERQA IT E+ EIV+GA AL
Sbjct:  200 FEPSAEEVLNNAVTLYLSTIIFGTIVESQVSEQASRRLAMENATNNGKELEYNLSIQYNRERQASITQEISEIVSGANAL 279          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HAHCH (ATP synthase gamma chain OS=Hahella chejuensis (strain KCTC 2396) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   +LD ++  ++ SQ+ +A+ E+ A E AARM AM +ATDNA  +   L +AYN+ RQA IT E+ EIV+GA A+
Sbjct:  207 IYEPDAKGLLDGLLTRFIESQVYQAVVENNACEQAARMIAMKSATDNAGGIINELELAYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_DESOH (ATP synthase gamma chain OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  235 EQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 471
            E  P +ILDAM+P  +  QI  AL E+  SE AARM+AM  A+   +++   L++ YN+ RQA IT EL++IV GAEAL
Sbjct:  218 EPSPDEILDAMLPKNVFIQIYSALLETSTSEHAARMAAMDNASKACNDMINELTLLYNKARQAAITAELMDIVGGAEAL 296          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_COLMA (ATP synthase gamma chain OS=Colwellia maris GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   +LD ++  Y+ SQ+ + + E+ A E A+RM +M  ATDNA +L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  206 IYEPDANSLLDQLLVRYIESQVYQGVVENIACEQASRMVSMKAATDNAGDLIDDLQLVYNKARQAAITQELGEIVAGAAAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BACCN (ATP synthase gamma chain OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE    +IL  ++P Y  S +  AL +  ASE AARM+AM +ATDNA E+   L++++N+ RQA IT E+ EIV GA AL
Sbjct:  206 FEPSEEEILKVLLPQYAESLVYGALLDGKASEHAARMTAMKSATDNAMEVIDTLTLSFNRARQAAITQEITEIVGGAAAL 285          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_THIDA (ATP synthase gamma chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E D   ++DAM+  Y+ S + + + E+ ASE +ARM AM  A+DNA  +   L + YN+ RQA IT EL EIVAGA A+
Sbjct:  210 IYEPDAKPVVDAMLMRYIESLVYQGVAENIASEQSARMVAMKAASDNAKNVIGELKLVYNKTRQAAITKELSEIVAGAAAV 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STRMU (ATP synthase gamma chain OS=Streptococcus mutans GN=atpG PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -1
Query:  235 FEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE +P++  IL+ ++P Y  S I  A+ ++  +E AA M+AM TATDNAD++ ++L+  YN+ RQA IT E+ EIVAGA AL
Sbjct:  210 FELEPSREAILEQLLPQYAESLIYGAIIDAKTAEHAAGMTAMQTATDNADKVIEDLTKLYNRVRQAAITQEITEIVAGANAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAES (ATP synthase gamma chain OS=Staphylococcus epidermidis (strain ATCC 12228) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A+RM+AM  A+DNA EL  +LS+ YN+ RQA IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHASRMTAMRNASDNATELIDDLSLEYNRARQAAITQQITEIVGGSSAL 287          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_RUBXD3.023e-1250.00ATP synthase gamma chain OS=Rubrobacter xylanophil... [more]
ATPG_POLNA3.023e-1242.11ATP synthase gamma chain OS=Polaromonas naphthalen... [more]
ATPG_MESFL3.023e-1247.50ATP synthase gamma chain OS=Mesoplasma florum GN=a... [more]
ATPG_HAHCH3.023e-1245.68ATP synthase gamma chain OS=Hahella chejuensis (st... [more]
ATPG_DESOH3.023e-1249.37ATP synthase gamma chain OS=Desulfococcus oleovora... [more]
ATPG_COLMA3.023e-1245.68ATP synthase gamma chain OS=Colwellia maris GN=atp... [more]
ATPG_BACCN3.023e-1248.75ATP synthase gamma chain OS=Bacillus cereus subsp.... [more]
ATPG_THIDA3.949e-1245.68ATP synthase gamma chain OS=Thiobacillus denitrifi... [more]
ATPG_STRMU3.949e-1248.78ATP synthase gamma chain OS=Streptococcus mutans G... [more]
ATPG_STAES3.949e-1247.50ATP synthase gamma chain OS=Staphylococcus epiderm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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