CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STAEQ (ATP synthase gamma chain OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   IL  ++P Y+ S I   + ++ ASE A+RM+AM  A+DNA EL  +LS+ YN+ RQA IT ++ EIV G+ AL
Sbjct:  208 FEPDKESILSVILPQYVESLIYGTILDAKASEHASRMTAMRNASDNATELIDDLSLEYNRARQAAITQQITEIVGGSSAL 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SILST (ATP synthase gamma chain OS=Silicibacter sp. (strain TM1040) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E     IL  ++P  + +QI   L E+ ASE  ARMSAM  AT NA E+   L++ YN+ RQA IT EL+EI++GAEAL
Sbjct:  212 YEPSEEAILADLLPRGVATQIFAGLLENGASEQGARMSAMDNATRNAGEMIDKLTIEYNRSRQAVITNELIEIISGAEAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RICRS (ATP synthase gamma chain OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E +   ++  ++ LY+NSQI  AL +S ASE  ARM+AM  AT+NA++L   L +  N+ RQA IT EL+EI+AG+EA+
Sbjct:  244 YEYEGENLISNLINLYVNSQINYALLQSRASEEGARMTAMENATNNANDLISKLVLKLNRSRQAIITTELIEIIAGSEAV 323          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RICRO (ATP synthase gamma chain OS=Rickettsia rickettsii (strain Iowa) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E +   ++  ++ LY+NSQI  AL +S ASE  ARM+AM  AT+NA++L   L +  N+ RQA IT EL+EI+AG+EA+
Sbjct:  244 YEYEGENLISNLINLYVNSQINYALLQSRASEEGARMTAMENATNNANDLISKLVLKLNRSRQAIITTELIEIIAGSEAV 323          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RICPU (ATP synthase gamma chain OS=Rickettsia peacockii (strain Rustic) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E +   ++  ++ LY+NSQI  AL +S ASE  ARM+AM  AT+NA++L   L +  N+ RQA IT EL+EI+AG+EA+
Sbjct:  244 YEYEGENLISNLINLYVNSQINYALLQSRASEEGARMTAMENATNNANDLISKLVLKLNRSRQAIITTELIEIIAGSEAV 323          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RICFE (ATP synthase gamma chain OS=Rickettsia felis GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E +   ++  ++ LY+NSQI  AL +S ASE  ARM+AM  AT+NA++L   L +  N+ RQA IT EL+EI+AG+EA+
Sbjct:  209 YEYEGENLISNLINLYVNSQINYALLQSRASEEGARMTAMENATNNANDLISKLVLKLNRSRQAIITTELIEIIAGSEAV 288          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PSYCK (ATP synthase gamma chain OS=Psychrobacter cryohalolentis (strain K5) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  232 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 495
            ELS   ++E D   ++D ++  Y+ S + +A+ E+ ASE ++RM AM  ATDNA +L  +L + YN+ RQA IT E+ EIV GA A++
Sbjct:  206 ELSWDYIYEPDIKTLIDELLGRYIESIVYQAVMENIASEQSSRMVAMKAATDNAGDLINDLQLVYNKLRQAAITREISEIVGGAAAVS 293          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PSYA2 (ATP synthase gamma chain OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  232 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 495
            ELS   ++E D   ++D ++  Y+ S + +A+ E+ ASE ++RM AM  ATDNA +L  +L + YN+ RQA IT E+ EIV GA A++
Sbjct:  206 ELSWDYIYEPDIKTLIDELLGRYIESIVYQAVMENIASEQSSRMVAMKAATDNAGDLINDLQLVYNKLRQAAITREISEIVGGAAAVS 293          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_NOCFA (ATP synthase gamma chain OS=Nocardia farcinica GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            FE D   +L A++P Y+N++I  +L E+ ASE AAR +AM  ATDNA+EL   L    N  RQA+IT E+ EIV G  AL
Sbjct:  237 FEPDADVLLAALLPKYVNTRIYASLLEAAASESAARRTAMKAATDNANELASVLQREANSVRQAQITQEISEIVGGVNAL 316          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCMO (ATP synthase gamma chain OS=Mycoplasma mobile GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = -1
Query:  241 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAE 474
            FE DP  I    +PLY +S +   + ES  SEV++R  AM  AT NADEL   L +  N  RQ+KIT E+ EIVAG+E
Sbjct:  206 FEPDPITIFQKAIPLYFSSLLYSCVLESHVSEVSSRRIAMENATKNADELGDQLKIELNTIRQSKITQEITEIVAGSE 283          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_STAEQ3.949e-1247.50ATP synthase gamma chain OS=Staphylococcus epiderm... [more]
ATPG_SILST3.949e-1248.75ATP synthase gamma chain OS=Silicibacter sp. (stra... [more]
ATPG_RICRS3.949e-1247.50ATP synthase gamma chain OS=Rickettsia rickettsii ... [more]
ATPG_RICRO3.949e-1247.50ATP synthase gamma chain OS=Rickettsia rickettsii ... [more]
ATPG_RICPU3.949e-1247.50ATP synthase gamma chain OS=Rickettsia peacockii (... [more]
ATPG_RICFE3.949e-1247.50ATP synthase gamma chain OS=Rickettsia felis GN=at... [more]
ATPG_PSYCK3.949e-1243.18ATP synthase gamma chain OS=Psychrobacter cryohalo... [more]
ATPG_PSYA23.949e-1243.18ATP synthase gamma chain OS=Psychrobacter arcticus... [more]
ATPG_NOCFA3.949e-1250.00ATP synthase gamma chain OS=Nocardia farcinica GN=... [more]
ATPG_MYCMO3.949e-1248.72ATP synthase gamma chain OS=Mycoplasma mobile GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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