CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:1..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_LACLS (ATP synthase gamma chain OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  235 ELSPLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 495
            E + L+ FE +P +  IL+ ++P Y  S I  ++ ++  +E AA M+AM TATDNA  +  +L++ YN+ RQA IT E+ EIVAGA AL
Sbjct:  201 EKASLVTFELEPDRETILNQLLPQYAESMIYGSIVDAKTAEHAAGMTAMRTATDNAHSVINDLTIQYNRARQASITQEITEIVAGASAL 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_LACLM (ATP synthase gamma chain OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  235 ELSPLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 495
            E + L+ FE +P +  IL+ ++P Y  S I  ++ ++  +E AA M+AM TATDNA  +  +L++ YN+ RQA IT E+ EIVAGA AL
Sbjct:  201 EKASLVTFELEPDRETILNQLLPQYAESMIYGSIVDAKTAEHAAGMTAMRTATDNAHSVINDLTIQYNRARQASITQEITEIVAGASAL 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_JANMA (ATP synthase gamma chain OS=Janthinobacterium sp. (strain Marseille) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  235 DSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 519
            D +  ++  L+   ++E D   ++D ++  Y+ + I +A+ E+ ASE +ARM AM +A+DNA  +   L + YN+ RQA IT EL EIVAGA A+
Sbjct:  195 DKLKADEDSLAWDYIYEPDAQTVIDELLVRYVEALIFQAVAENLASEQSARMVAMKSASDNAGSVISELKLVYNKTRQAAITKELSEIVAGAAAV 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_DICNV (ATP synthase gamma chain OS=Dichelobacter nodosus (strain VCS1703A) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E +   ILD ++  Y+   + +A+ E+ A E++ARM AM +A+DNA  L K L + YN+ RQ  IT EL EIVAGA+A+
Sbjct:  209 IYEPNAESILDTLLKRYLEFTVKQAVAENIACEMSARMLAMKSASDNAGALIKELQLKYNKARQTAITQELTEIVAGADAV 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CLOCE (ATP synthase gamma chain OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  235 RDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 522
            R+ V  ++  L   + +E    ++L+ ++P Y+   +     E+F SE  ARM+AM  AT NADE+ + L++ YN+ RQA IT E+ EIV GA AL
Sbjct:  198 REDVKADEIVLDQRLKYEPSVTEVLNVLIPKYIKGIMYGTFVEAFTSEQNARMTAMDNATKNADEMLQKLNLYYNRARQATITQEISEIVGGASAL 293          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CAUCR (ATP synthase gamma chain OS=Caulobacter crescentus GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 36/86 (41.86%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  235 PLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 486
            P  ++E +P++  IL+ ++P  +  QIL AL ++ A   A++M+AM  AT NA ++ K  ++ YN+ RQA+IT EL+EI++GAEA+
Sbjct:  206 PTAVYEYEPSEEAILETLLPRNLTVQILSALLDNMAGFYASQMTAMDNATRNAGDMIKRYTLEYNRSRQAQITKELIEIISGAEAV 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CAUCN (ATP synthase gamma chain OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 36/86 (41.86%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  235 PLMLFEQDPAQ--ILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 486
            P  ++E +P++  IL+ ++P  +  QIL AL ++ A   A++M+AM  AT NA ++ K  ++ YN+ RQA+IT EL+EI++GAEA+
Sbjct:  206 PTAVYEYEPSEEAILETLLPRNLTVQILSALLDNMAGFYASQMTAMDNATRNAGDMIKRYTLEYNRSRQAQITKELIEIISGAEAV 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BURP8 (ATP synthase gamma chain OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 42/112 (37.50%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            ++L  L+T + +   ++DS T N    S   ++E D   ++D ++  Y+ + + +A+ E+ ASE +ARM AM  A+DNA  +   L ++YN+ RQA IT EL EIV GA A+
Sbjct:  187 EQLLPLSTEQFEAKDDKDSPTPNT---SWDYIYEPDAQTVVDELLVRYVEALVYQAVAENMASEQSARMVAMKAASDNAKTVINELQLSYNKSRQAAITKELSEIVGGAAAV 295          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_XANP2 (ATP synthase gamma chain OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  235 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            ++GE  P+  +E     IL  ++P  +  QI RAL E+ AS   ++MSAM  AT NA ++ K  ++ YN+ RQA IT EL+EI++GAEAL
Sbjct:  202 DEGEGGPVYEYEPAEEDILADLLPRNIAVQIFRALLENQASFYGSQMSAMDNATRNAGDMIKKQTLIYNRTRQAMITKELIEIISGAEAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SULNB (ATP synthase gamma chain OS=Sulfurovum sp. (strain NBC37-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = -1
Query:  235 VERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 528
            +E  +V+ ++ E+ P      D   +LDA++  Y+   I  AL +S A+E +ARM AM  AT NA E+ K+L+V YN+ RQ  IT EL+EI++G E++
Sbjct:  202 LELSTVSTSEMEVEP-----DDDDTLLDALVKRYVEYSIYYALIDSLAAEHSARMQAMDAATKNAKEMVKDLNVKYNKARQEAITTELIEIISGMESM 294          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_LACLS3.949e-1244.94ATP synthase gamma chain OS=Lactococcus lactis sub... [more]
ATPG_LACLM3.949e-1244.94ATP synthase gamma chain OS=Lactococcus lactis sub... [more]
ATPG_JANMA3.949e-1240.00ATP synthase gamma chain OS=Janthinobacterium sp. ... [more]
ATPG_DICNV3.949e-1244.44ATP synthase gamma chain OS=Dichelobacter nodosus ... [more]
ATPG_CLOCE3.949e-1239.58ATP synthase gamma chain OS=Clostridium cellulolyt... [more]
ATPG_CAUCR3.949e-1241.86ATP synthase gamma chain OS=Caulobacter crescentus... [more]
ATPG_CAUCN3.949e-1241.86ATP synthase gamma chain OS=Caulobacter crescentus... [more]
ATPG_BURP83.949e-1237.50ATP synthase gamma chain OS=Burkholderia phymatum ... [more]
ATPG_XANP25.157e-1244.44ATP synthase gamma chain OS=Xanthobacter autotroph... [more]
ATPG_SULNB5.157e-1240.82ATP synthase gamma chain OS=Sulfurovum sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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