CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_KINRD (ATP synthase gamma chain OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = -1
Query:  235 GELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 498
            GEL PL  FE     +LDA++P Y+NS+I   L ++ ASE+AAR  AM +ATDNADEL K L+   N  RQA IT E+ EIV GA+AL
Sbjct:  208 GELQPLYEFEPSADAVLDALLPQYVNSRIYNCLLQAAASELAARQRAMKSATDNADELIKKLTRLANNARQADITQEISEIVGGADAL 295          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLTE (ATP synthase gamma chain OS=Chlorobium tepidum GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 45/83 (54.22%), Postives = 64/83 (77.11%), Query Frame = -1
Query:  229 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 477
            L+E  PA I+D ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGA+AL Q
Sbjct:  210 LYEPSPAAIIDELVPKHLNTQLWRVMLESNAAEQAARMAAMDSATENAKELIRVLNISYNRARQAAITKELSEIVAGADALKQ 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLCH (ATP synthase gamma chain OS=Chlorobium chlorochromatii (strain CaD3) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E +PA I+D ++P ++ +Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGAEAL
Sbjct:  211 MYEPNPAAIIDVLLPKHLRTQVWRIMLESNAAEQAARMAAMDSATENAKELLRTLNISYNRARQAAITTELSEIVAGAEAL 291          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLT3 (ATP synthase gamma chain OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  229 KGELSPLM--LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 501
            + +L P++  ++E  P  I++ ++P ++N+Q+ R L ES A+E A+RM+AM +ATDNA EL ++LS+ YN+ RQA IT E+LEIV GA AL Q
Sbjct:  210 QNKLVPIVDYIYEPSPEAIINELVPKHLNTQLWRVLLESNAAEQASRMTAMDSATDNAKELLRSLSITYNRARQAAITKEILEIVGGANALEQ 302          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLP8 (ATP synthase gamma chain OS=Chlorobaculum parvum (strain NCIB 8327) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 44/83 (53.01%), Postives = 63/83 (75.90%), Query Frame = -1
Query:  229 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 477
            L+E  P  I+D ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGA+AL Q
Sbjct:  210 LYEPSPEAIIDELVPKHLNTQVWRVMLESNAAEQAARMAAMDSATENAKELIRVLNISYNRARQAAITKELSEIVAGADALKQ 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_AMOA5 (ATP synthase gamma chain OS=Amoebophilus asiaticus (strain 5a2) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = -1
Query:  229 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 477
            ++E   A +++ ++P+ +  Q+ +AL ES ASE  ARM+ MS ATDNA+EL K+L + YN+ RQA IT E+LEI AGAEAL+Q
Sbjct:  208 IYEPSKASLVETLIPMTLKIQLYKALLESAASEHGARMTTMSKATDNAEELLKSLRITYNKTRQAAITNEILEIAAGAEALSQ 290          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLPD (ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain DSM 266) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 42/81 (51.85%), Postives = 61/81 (75.31%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E  P  I+D ++P ++N+Q+ R + ES A+E AARMSAM +AT+NA EL + L+++YN+ RQA IT EL EIV GA+AL
Sbjct:  209 IYEPSPESIIDVLVPKHLNTQVWRVMLESNAAEQAARMSAMDSATENAKELLRTLNISYNRARQAAITKELSEIVGGADAL 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HELMI (ATP synthase gamma chain OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  235 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 486
            PL  FE  P  +LD ++P Y+ +QI RAL ES ASE  ARM+AM +ATDNA E+   L++++N+ RQA IT E+ E+V GA AL
Sbjct:  206 PLYAFEPSPEAVLDELLPKYVENQIYRALLESKASEQGARMTAMGSATDNAKEMINKLTLSFNRARQAAITKEISEVVGGAAAL 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RHIE6 (ATP synthase gamma chain OS=Rhizobium etli (strain CIAT 652) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 43/80 (53.75%), Postives = 61/80 (76.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA ILD ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA E+   L+++YN++RQA+IT EL+EI++GAEAL
Sbjct:  215 YEPDPAAILDDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLPB (ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain BS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E  P+ I+D ++P ++N+QI R + ES A+E A+RM+AM +AT+NA EL + L ++YN+ RQA IT EL EIVAGAEAL
Sbjct:  212 IYEPSPSAIIDVLVPKHLNTQIWRMMLESNAAEHASRMTAMDSATENAKELMRVLKISYNRARQAAITTELSEIVAGAEAL 292          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_KINRD1.830e-1754.55ATP synthase gamma chain OS=Kineococcus radiotoler... [more]
ATPG_CHLTE1.830e-1754.22ATP synthase gamma chain OS=Chlorobium tepidum GN=... [more]
ATPG_CHLCH3.121e-1753.09ATP synthase gamma chain OS=Chlorobium chlorochrom... [more]
ATPG_CHLT34.077e-1748.39ATP synthase gamma chain OS=Chloroherpeton thalass... [more]
ATPG_CHLP85.324e-1753.01ATP synthase gamma chain OS=Chlorobaculum parvum (... [more]
ATPG_AMOA55.324e-1751.81ATP synthase gamma chain OS=Amoebophilus asiaticus... [more]
ATPG_CHLPD6.954e-1751.85ATP synthase gamma chain OS=Chlorobium phaeobacter... [more]
ATPG_HELMI9.082e-1752.38ATP synthase gamma chain OS=Heliobacterium modesti... [more]
ATPG_RHIE61.186e-1653.75ATP synthase gamma chain OS=Rhizobium etli (strain... [more]
ATPG_CHLPB1.186e-1653.09ATP synthase gamma chain OS=Chlorobium phaeobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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