CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUC2 (ATP synthase gamma chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUAB (ATP synthase gamma chain OS=Brucella abortus GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUA2 (ATP synthase gamma chain OS=Brucella abortus (strain 2308) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUA1 (ATP synthase gamma chain OS=Brucella abortus (strain S19) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BARHE (ATP synthase gamma chain OS=Bartonella henselae GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = -1
Query:  235 NKGELSPLML-FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            N  +L  ++  +E D A +LD ++P  ++ QI RAL E+ A E+ A+M+AM  A+ NA E+   L+VAYN++RQA+IT EL+EI+AGAEAL
Sbjct:  213 NSADLQSIVYDYEPDAASLLDVLVPRNLSVQIFRALLENVAGEMGAKMTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 303          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_STRGG (ATP synthase gamma chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  235 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 501
            KGE+ PL  FE     +LDA++P Y+ S+I  AL ++ ASE AAR  AM +ATDNA +L K+LS   N  RQA+IT E+ EIV GA AL
Sbjct:  208 KGEILPLFDFEPSAEDVLDALLPRYVESRIYNALLQAAASEHAARRRAMKSATDNAGDLIKSLSRLANAARQAEITQEISEIVGGASAL 296          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BART1 (ATP synthase gamma chain OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E D A +L+A++P  ++ QI RAL E+ A E+ A+M+AM  A+ NA E+   L+VAYN++RQA+IT EL+EI+AGAEAL
Sbjct:  229 YEPDAASLLEALVPRNLSVQIFRALLENVAGEMGAKMTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 308          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCVP (ATP synthase gamma chain OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.507e-16
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  235 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 483
            L  FE DP  + DA++P Y+ +++  AL E+ ASE A+R  AM +ATDNAD+L K L++A N+ERQA+IT E+ EIV GA AL
Sbjct:  223 LFSFEPDPETLFDALLPRYVATRVYAALLEAAASESASRRRAMKSATDNADDLIKALTLAANRERQAQITQEISEIVGGANAL 305          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HYPNA (ATP synthase gamma chain OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.507e-16
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  235 ELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 567
            +L   T  EG  +++     +         ++E     +L+A++P Y+N+QIL A+ ES A E A+RM+AM  AT NA +L K L++ YN+ RQA+IT EL+EI++GAEAL
Sbjct:  191 QLIPATAPEGAPVIDLGGAQY---------IYEPSEEALLEALLPRYINTQILSAMLESSAGEQASRMTAMDNATRNAKDLIKALNLKYNRARQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCS2 (ATP synthase gamma chain OS=Mycobacterium smegmatis GN=atpG PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  235 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 483
            L  FE DP  + DA++P Y+ +++  AL E+ ASE A+R  AM +ATDNAD+L K L++A N+ERQA+IT E+ EIV GA AL
Sbjct:  221 LYSFEPDPETLFDALLPRYIATRVYAALLEAAASESASRRRAMKSATDNADDLIKALTLAANRERQAQITQEISEIVGGANAL 303          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_BRUC22.642e-1652.50ATP synthase gamma chain OS=Brucella canis (strain... [more]
ATPG_BRUAB2.642e-1652.50ATP synthase gamma chain OS=Brucella abortus GN=at... [more]
ATPG_BRUA22.642e-1652.50ATP synthase gamma chain OS=Brucella abortus (stra... [more]
ATPG_BRUA12.642e-1652.50ATP synthase gamma chain OS=Brucella abortus (stra... [more]
ATPG_BARHE2.642e-1648.35ATP synthase gamma chain OS=Bartonella henselae GN... [more]
ATPG_STRGG3.451e-1652.81ATP synthase gamma chain OS=Streptomyces griseus s... [more]
ATPG_BART13.451e-1652.50ATP synthase gamma chain OS=Bartonella tribocorum ... [more]
ATPG_MYCVP4.507e-1653.01ATP synthase gamma chain OS=Mycobacterium vanbaale... [more]
ATPG_HYPNA4.507e-1641.44ATP synthase gamma chain OS=Hyphomonas neptunium (... [more]
ATPG_MYCS25.887e-1653.01ATP synthase gamma chain OS=Mycobacterium smegmati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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