CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:1..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ARTAT (ATP synthase gamma chain OS=Arthrobacter aurescens (strain TC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  235 IVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 531
            +VE ++ +  + EL PL  FE +  Q+LDA++P Y+ S+I  A+ ++ ASE+AAR  AM +A DNA +L K  +   N  RQA+IT EL EIVAGA+AL
Sbjct:  198 VVEEEAAS--ESELLPLYEFEPETEQVLDALLPRYIESRIFAAMLQAAASELAARQRAMKSAGDNATDLIKKYTRLRNTARQAEITQELSEIVAGADAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SORC5 (ATP synthase gamma chain OS=Sorangium cellulosum (strain So ce56) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15
Identity = 40/83 (48.19%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  229 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 477
            L+E D   +L+ ++P+Y++  ILRAL ES ASE+ A+++AM  A  NA E+  NL++ YN+ RQA IT EL+EI+ G+EAL +
Sbjct:  241 LYEPDKGALLERLVPMYVDISILRALYESMASELGAKLTAMDAANKNAKEVIDNLTLEYNKARQAAITKELMEIIGGSEALKE 323          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E D  +IL A++P  +  QILRAL E+ ASE  ARMSAM  AT NA E+ K  ++ YN+ RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDEGEILAALLPKNLTVQILRALLENAASEQGARMSAMDNATRNAGEMIKKQTLVYNRTRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CORU7 (ATP synthase gamma chain OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  235 RLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 558
            +    E KM +  D V+ +  ++S  + FE D   +L  ++P Y++  I  AL E+ ASE AAR +AMS ATDNA EL +NLS   NQ RQA+IT E+ EIV GA AL
Sbjct:  211 KTVVEEEKMELGSDMVSDSADQVSAEVDFEPDADTLLANLLPQYVSRGIFAALLEAAASESAARRTAMSAATDNASELVENLSRIANQARQAQITQEITEIVGGASAL 318          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RHILO (ATP synthase gamma chain OS=Rhizobium loti GN=atpG PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E +P +IL  ++P  ++ Q+ RAL E+ A E+ A+MSAM  AT NA E+   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  215 YEPEPGEILSDLIPRNISVQVFRALLENAAGEMGAKMSAMDNATRNAGEMINKLSITYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MYCGI (ATP synthase gamma chain OS=Mycobacterium gilvum (strain PYR-GCK) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  235 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 483
            L  FE DP  + DA++P Y+ +++  AL E+ ASE A+R  AM +ATDNAD+L K L ++ N+ERQA+IT E+ EIV GA AL
Sbjct:  223 LFSFEPDPETLFDALLPRYVATRVYAALLEAAASESASRRRAMKSATDNADDLIKALKLSANRERQAQITQEISEIVGGANAL 305          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_HALOH (ATP synthase gamma chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = -1
Query:  235 DSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 519
            D     +G+++   L+E  P  ++D ++P Y+ + +  AL E+ ASE  ARM+AM  ATDNA EL   L+++YN+ RQA IT E+ EIV GAEAL
Sbjct:  192 DDKNQEEGKINTEYLYEPSPEAVMDILLPSYIKNILYSALIEAKASEFGARMTAMDAATDNAGELIDKLTLSYNRARQAAITKEITEIVGGAEAL 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_GRAFK (ATP synthase gamma chain OS=Gramella forsetii (strain KT0803) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            +FE    +I+  ++P  +  Q+ +AL++SFASE  ARM+AM  AT+NA EL+ +L ++YN+ RQA IT E+LEIV GAEAL
Sbjct:  204 IFEPSKLEIVKDLIPKSLKMQLFKALRDSFASEHGARMTAMHKATENATELRDDLKLSYNKARQASITNEILEIVGGAEAL 284          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEWM (ATP synthase gamma chain OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP ++LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 LYEPDPKELLDTLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGELISDLELVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SHEPW (ATP synthase gamma chain OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP ++LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA EL  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 LYEPDPKELLDTLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGELISDLELVYNKARQAAITQELSEIVSGAAAV 286          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_ARTAT7.688e-1647.47ATP synthase gamma chain OS=Arthrobacter aurescens... [more]
ATPG_SORC51.004e-1548.19ATP synthase gamma chain OS=Sorangium cellulosum (... [more]
ATPG_METS41.004e-1555.00ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_CORU71.004e-1546.30ATP synthase gamma chain OS=Corynebacterium urealy... [more]
ATPG_RHILO1.311e-1550.00ATP synthase gamma chain OS=Rhizobium loti GN=atpG... [more]
ATPG_MYCGI1.311e-1551.81ATP synthase gamma chain OS=Mycobacterium gilvum (... [more]
ATPG_HALOH1.311e-1545.26ATP synthase gamma chain OS=Halothermothrix orenii... [more]
ATPG_GRAFK1.311e-1550.62ATP synthase gamma chain OS=Gramella forsetii (str... [more]
ATPG_SHEWM1.713e-1551.85ATP synthase gamma chain OS=Shewanella woodyi (str... [more]
ATPG_SHEPW1.713e-1551.85ATP synthase gamma chain OS=Shewanella piezotolera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
back to top