CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SHEAM (ATP synthase gamma chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            ++EQDP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  206 IYEQDPKDLLDTLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGTLIDDLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SACEN (ATP synthase gamma chain OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTF-----------NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 340
            DEL ++ T    MI ++ SV              +  L P+  FE D   +  A++P Y+N+++   L ++ ASE AAR +AM +ATDNADE+ + LS   NQ RQA+IT E+ EIV G EAL+
Sbjct:  180 DELHLVHTEFVSMITQKPSVKRVAPLEVEYSEEPQKTLRPVYDFEPDADTLFKALLPKYINTRLFAGLLDAAASEHAARRTAMKSATDNADEIIRTLSREANQARQAQITQEISEIVGGVEALS 303          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROMH (ATP synthase gamma chain OS=Proteus mirabilis (strain HI4320) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ +++ E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKTLLDTLLRRYIESQVYQSVVENLASEQAARMVAMKAATDNGGNLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PECCP (ATP synthase gamma chain OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV GA A+
Sbjct:  207 LYEPDPKSLLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_HAEIN (ATP synthase gamma chain OS=Haemophilus influenzae GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E +P  +LD+++  Y+ SQI +A+ ++ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  209 LYEPEPKVLLDSLLVRYLESQIYQAVVDNVASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_ERWT9 (ATP synthase gamma chain OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  209 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGNLIKELQLVYNKARQASITQELTEIVSGASAV 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_ERWCT (ATP synthase gamma chain OS=Erwinia carotovora subsp. atroseptica GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV GA A+
Sbjct:  207 LYEPDPKSLLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CORGB (ATP synthase gamma chain OS=Corynebacterium glutamicum (strain R) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            LP+    E ++  + + +  + G++ P   FE D   +L+A++P Y++ ++     E+ A+E A+R +AM +ATDNA EL K+LS   NQ RQA+IT E+ EIV GA AL
Sbjct:  209 LPVEPVIEDEIFEKGEDLLSSSGDVEPDYEFEPDADTLLEALLPQYVSRRLFSIFLEAAAAESASRRNAMKSATDNASELVKDLSRVANQARQAQITQEITEIVGGAGAL 318          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_YERPY (ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_YERPS (ATP synthase gamma chain OS=Yersinia pseudotuberculosis GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_SHEAM6.508e-1550.62ATP synthase gamma chain OS=Shewanella amazonensis... [more]
ATPG_SACEN6.508e-1540.32ATP synthase gamma chain OS=Saccharopolyspora eryt... [more]
ATPG_PROMH6.508e-1550.62ATP synthase gamma chain OS=Proteus mirabilis (str... [more]
ATPG_PECCP6.508e-1550.62ATP synthase gamma chain OS=Pectobacterium carotov... [more]
ATPG_HAEIN6.508e-1551.85ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_ERWT96.508e-1550.62ATP synthase gamma chain OS=Erwinia tasmaniensis (... [more]
ATPG_ERWCT6.508e-1550.62ATP synthase gamma chain OS=Erwinia carotovora sub... [more]
ATPG_CORGB6.508e-1540.00ATP synthase gamma chain OS=Corynebacterium glutam... [more]
ATPG_YERPY8.500e-1550.62ATP synthase gamma chain OS=Yersinia pseudotubercu... [more]
ATPG_YERPS8.500e-1550.62ATP synthase gamma chain OS=Yersinia pseudotubercu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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