CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SHIFL (ATP synthase gamma chain OS=Shigella flexneri GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SHIF8 (ATP synthase gamma chain OS=Shigella flexneri serotype 5b (strain 8401) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SHIDS (ATP synthase gamma chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SHIBS (ATP synthase gamma chain OS=Shigella boydii serotype 4 (strain Sb227) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SHIB3 (ATP synthase gamma chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SERP5 (ATP synthase gamma chain OS=Serratia proteamaculans (strain 568) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKVLLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGASAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SALTY (ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SALTI (ATP synthase gamma chain OS=Salmonella typhi GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SALSV (ATP synthase gamma chain OS=Salmonella schwarzengrund (strain CVM19633) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SALPK (ATP synthase gamma chain OS=Salmonella paratyphi A (strain AKU_12601) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_SHIFL8.500e-1550.62ATP synthase gamma chain OS=Shigella flexneri GN=a... [more]
ATPG_SHIF88.500e-1550.62ATP synthase gamma chain OS=Shigella flexneri sero... [more]
ATPG_SHIDS8.500e-1550.62ATP synthase gamma chain OS=Shigella dysenteriae s... [more]
ATPG_SHIBS8.500e-1550.62ATP synthase gamma chain OS=Shigella boydii seroty... [more]
ATPG_SHIB38.500e-1550.62ATP synthase gamma chain OS=Shigella boydii seroty... [more]
ATPG_SERP58.500e-1550.62ATP synthase gamma chain OS=Serratia proteamaculan... [more]
ATPG_SALTY8.500e-1550.62ATP synthase gamma chain OS=Salmonella typhimurium... [more]
ATPG_SALTI8.500e-1550.62ATP synthase gamma chain OS=Salmonella typhi GN=at... [more]
ATPG_SALSV8.500e-1550.62ATP synthase gamma chain OS=Salmonella schwarzengr... [more]
ATPG_SALPK8.500e-1550.62ATP synthase gamma chain OS=Salmonella paratyphi A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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