CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP8 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 8801) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.345e-27
Identity = 61/112 (54.46%), Postives = 85/112 (75.89%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  L T +GK+ VER+++          M+FEQDP QILDA++PLY+N+Q+LR LQE+ ASE+AARM+AMS A+DNA +L   L+++YN+ RQA IT +L+E+VAGA AL
Sbjct:  203 DEVFRLITRDGKLRVERETIAQEVSSFPQDMIFEQDPIQILDALLPLYINNQLLRGLQEAAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQQLMEVVAGANAL 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_ACAM1 (ATP synthase gamma chain OS=Acaryochloris marina (strain MBIC 11017) GN=atpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.681e-27
Identity = 65/113 (57.52%), Postives = 86/113 (76.11%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  LTT  G+  VER+ +     +  P  M+FEQ+P QILDA++PLY+N+Q+LRALQES ASE+AARM+AM+ A+DNA EL   L+++YN+ RQA IT ELLE+V GAEAL
Sbjct:  204 DEVFRLTTRGGQFQVERERMERGTPQEMPSDMIFEQNPIQILDALLPLYLNNQLLRALQESAASELAARMTAMNNASDNASELIGTLTLSYNKARQAAITQELLEVVGGAEAL 316          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP2 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.157e-26
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE   L T  GK  VER+ V     EL   M+FEQDP  IL+A++PLY+++Q+LRALQE  ASE+AARM+AM+ A+DNA +L K L+++YN+ RQA IT EL E+VAGA AL
Sbjct:  203 DETFNLITRGGKFQVEREKVATEVKELPADMIFEQDPKDILNALLPLYLSNQLLRALQEGAASELAARMTAMNNASDNASDLMKTLTLSYNKARQAAITQELSEVVAGANAL 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROMT (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL2A) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DE+  LTT + ++I+E+D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA EL KNL++ YN+ RQA IT E+LE+V GA A
Sbjct:  205 DEIFRLTTKDSQLIIEKDAAPSNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROM1 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL1A) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DE+  LTT + ++I+E+D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA EL KNL++ YN+ RQA IT E+LE+V GA A
Sbjct:  205 DEIFRLTTKDSQLIIEKDAAPTNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SPIPL (ATP synthase gamma chain OS=Spirulina platensis GN=atpG PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.195e-26
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LT+  GK  V R+ V+     L+  M+FEQDP +IL+A++PL++ +Q+LRA QES ASE+AARM+AMS A+DNA +L K L+++YN+ RQA IT ELLE+VAGA
Sbjct:  203 DEVFRLTSKGGKFDVTREKVSVEPEALAQDMIFEQDPVEILNALLPLFLTNQLLRAWQESTASELAARMTAMSNASDNASDLVKTLTLSYNKARQASITQELLEVVAGA 311          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNY3 (ATP synthase gamma chain OS=Synechocystis sp. (strain PCC 6803) GN=atpG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  L T  GK  VER+ V          M+FEQDP QIL+A++PLY  +Q+LRALQES ASE+AARM+AMS A+DNA +L   L+++YN+ RQA IT ELLE+VAGA +L
Sbjct:  203 DEIFRLITRGGKFQVEREKVEAPVESFPQDMIFEQDPVQILEALLPLYNTNQLLRALQESAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQELLEVVAGANSL 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_TRIEI (ATP synthase gamma chain OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  LT+  G+  V R++V+         M+FEQDP QILDA++PL++ +Q+LRA QES ASE+A+RM+AMS A+DNA EL   L++AYN+ RQA IT E+LE+V GA AL
Sbjct:  203 DEIFRLTSKGGEFEVSRETVSAAVKSFPRDMIFEQDPIQILDALLPLFLTNQLLRAWQESSASELASRMTAMSNASDNASELAGTLTLAYNKARQAAITQEILEVVGGANAL 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNR3 (ATP synthase gamma chain OS=Synechococcus sp. (strain RCC307) GN=atpG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 56/112 (50.00%), Postives = 83/112 (74.11%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+    T EG++ VER S +  + +L   ++FEQ P+Q+LD ++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+V GA A+
Sbjct:  203 DEIFRFVTKEGELGVERSSASNQEDKLKSDLVFEQSPSQLLDVLLPLYLQNQVLRSLQESAASELASRMTAMNNASDNAKALAKELTLDYNKARQAAITQEILEVVGGASAM 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROM4 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9211) GN=atpG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 56/112 (50.00%), Postives = 84/112 (75.00%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DE+  LTT   +++VE+D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V G+ +
Sbjct:  205 DEMFRLTTKNSRLVVEKDAAPSNEQPKLPSDVVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKTLNLTYNKARQAAITQEILEVVGGSSS 316          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_CYAP84.345e-2754.46ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_ACAM19.681e-2757.52ATP synthase gamma chain OS=Acaryochloris marina (... [more]
ATPG_SYNP22.157e-2656.25ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROMT4.804e-2652.68ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM14.804e-2652.68ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SPIPL8.195e-2655.05ATP synthase gamma chain OS=Spirulina platensis GN... [more]
ATPG_SYNY31.070e-2556.25ATP synthase gamma chain OS=Synechocystis sp. (str... [more]
ATPG_TRIEI4.067e-2553.57ATP synthase gamma chain OS=Trichodesmium erythrae... [more]
ATPG_SYNR34.067e-2550.00ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROM41.546e-2450.00ATP synthase gamma chain OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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