CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PHATR (ATP synthase gamma chain, chloroplastic OS=Phaeodactylum tricornutum GN=ATPC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  LT+  G+  VER  +     +  P  M+FEQDP QI++A++PLY+N QILR LQES ASE+AARM +M +A+DNA  L K L++ YN+ RQA +T ELLEI++GA AL
Sbjct:  257 DEVFQLTSESGQFGVERTELDVAAPQEFPNDMIFEQDPIQIVNAILPLYLNGQILRTLQESVASELAARMQSMQSASDNAGSLAKQLNLEYNRARQAAVTQELLEIISGASAL 369          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_ODOSI (ATP synthase gamma chain, chloroplastic OS=Odontella sinensis GN=ATPC PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 60/113 (53.10%), Postives = 82/113 (72.57%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  LT++ G   VER  +   + +  P  M+FEQDP QI+++++PLY+N QILR LQES ASE+AARM +M +A+DNA +L K LS  YN+ RQA +T E+LEIV+GA AL
Sbjct:  257 DEVFQLTSSGGDFEVERTELEVAEPQDFPNDMIFEQDPIQIINSILPLYLNGQILRTLQESVASELAARMQSMQSASDNAGDLAKRLSTEYNRARQAAVTQEILEIVSGASAL 369          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROMP (ATP synthase gamma chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.636e-24
Identity = 56/110 (50.91%), Postives = 81/110 (73.64%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT   K++VE+ ++  N  +  P  ++FEQ P Q+LD+++PLY+ +QILRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKNSKLLVEKSNIEKNDSDKLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROM5 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9515) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.636e-24
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT   K++VE+ ++  N+ +  P  ++FEQ P Q+LD+++PLY+ +QILRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKNSKLLVEKSNLEKNESDRLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROMS (ATP synthase gamma chain OS=Prochlorococcus marinus (strain AS9601) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 55/110 (50.00%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROM9 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9312) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 55/110 (50.00%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROM2 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9215) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 55/110 (50.00%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROM0 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9301) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 55/110 (50.00%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS3 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9311) GN=atpG PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.873e-24
Identity = 58/112 (51.79%), Postives = 82/112 (73.21%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DE+  LTT EG++ VE  S   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V G+ A
Sbjct:  203 DEIFRLTTKEGRLSVEAGSAPENSQPALPSDIVFEQSPDQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAA 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNPW (ATP synthase gamma chain OS=Synechococcus sp. (strain WH7803) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 57/113 (50.44%), Postives = 83/113 (73.45%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFN-KGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  LTT +G + VE  S   N + ELS  ++FEQ P Q+L+A++PLY+ +Q+LR+LQE+ ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGDLRVETGSAPANAQPELSSEIVFEQSPDQLLNALLPLYLQNQVLRSLQEAAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_PHATR2.019e-2453.10ATP synthase gamma chain, chloroplastic OS=Phaeoda... [more]
ATPG_ODOSI2.019e-2453.10ATP synthase gamma chain, chloroplastic OS=Odontel... [more]
ATPG_PROMP2.636e-2450.91ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM52.636e-2450.91ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROMS3.443e-2450.00ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM93.443e-2450.00ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM23.443e-2450.00ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM03.443e-2450.00ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNS35.873e-2451.79ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNPW2.232e-2350.44ATP synthase gamma chain OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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