CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROMA (ATP synthase gamma chain OS=Prochlorococcus marinus GN=atpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 53/110 (48.18%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  +TT   + ++E+D    N+  + P  ++FEQ P Q+L++++PLY+ +Q+LRALQE+ ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V GA
Sbjct:  205 DEIFRITTKGSRFVIEKDPAPANEEPVLPSDVVFEQSPDQLLNSLLPLYLQNQLLRALQEAAASELASRMTAMNNASDNAKELAKTLNLTYNKARQAAITQEILEVVGGA 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS9 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9902) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 56/112 (50.00%), Postives = 83/112 (74.11%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DE+  LTT++G++ VE  + + N     P  ++FEQ P Q+L+A++PLY+ +Q+LR LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V G+ A
Sbjct:  203 DEIFNLTTDQGRLTVEPGTSSANTAPKIPSDIVFEQSPDQLLNALLPLYLQNQLLRCLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAA 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNPX (ATP synthase gamma chain OS=Synechococcus sp. (strain WH8102) GN=atpG PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  LTT +G++ VE  +   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGRLTVEPGAGPANTEPKIPSDIVFEQTPEQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_GLOVI (ATP synthase gamma chain OS=Gloeobacter violaceus GN=atpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 52/107 (48.60%), Postives = 75/107 (70.09%), Query Frame = 2
Query:   14 MLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            ++T   G  ++        + E +   +FEQDP Q+LDA++PLY+ S++L ALQES ASE+AARM+AMS A+DNA +L   L++ YN+ RQA IT E+LE+V+GA A
Sbjct:  208 LITKGGGFEVLREKQQVRTEPEFAADTIFEQDPTQLLDALLPLYLTSEVLHALQESSASELAARMTAMSAASDNAKKLLSTLTIVYNKARQASITQEILEVVSGANA 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SYNSC (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9605) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE+  LTT +G + VE  +   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGLLTVEPGAGPANTEPKIPSDIVFEQTPEQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROMM (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9313) GN=atpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT + ++ VE+     N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROM3 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9303) GN=atpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 328
            DE+  LTT + ++ VE+     N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRALQES ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_VIGUN (ATP synthase subunit gamma, chloroplastic (Fragment) OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTA 226
            DE   LTT EGK+ VERD V     + SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS A
Sbjct:   42 DEFFRLTTKEGKLTVERDVVRTKTTDYSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNA 116          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PELPB (ATP synthase gamma chain OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 2
Query:   77 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 340
            E S   ++E  P+ I+D ++P ++N+QI R + ES A+E AARMSAM +AT+NA EL + L+++YN+ RQA IT EL EIV+GA+ALT
Sbjct:  203 ESSSDYIYEPSPSAIIDELVPKHLNTQIWRMMLESSAAEQAARMSAMDSATENAKELMRTLNISYNRARQAAITTELSEIVSGADALT 290          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROA2 (ATP synthase gamma chain OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 44/81 (54.32%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            ++E  PA I+D ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGAEAL
Sbjct:  209 IYEPSPASIIDVLVPKHLNTQVWRMMLESNAAEQAARMAAMDSATENAKELLRLLNISYNRARQAAITTELSEIVAGAEAL 289          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_PROMA2.232e-2348.18ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNS92.915e-2350.00ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNPX8.481e-2349.56ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_GLOVI1.889e-2248.60ATP synthase gamma chain OS=Gloeobacter violaceus ... [more]
ATPG_SYNSC2.467e-2249.56ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROMM9.376e-2249.09ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM39.376e-2249.09ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_VIGUN1.354e-2068.00ATP synthase subunit gamma, chloroplastic (Fragmen... [more]
ATPG_PELPB6.289e-1852.27ATP synthase gamma chain OS=Pelodictyon phaeoclath... [more]
ATPG_PROA21.830e-1754.32ATP synthase gamma chain OS=Prosthecochloris aestu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
back to top