CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PELLD (ATP synthase gamma chain OS=Pelodictyon luteolum (strain DSM 273) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 40/81 (49.38%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            ++E  PA I++ ++P ++N+Q+   + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIV GA+AL
Sbjct:  208 IYEPSPAAIIEELVPKHLNTQVWGMMLESNAAEQAARMTAMDSATENAKELLRGLNISYNRARQAAITKELSEIVGGADAL 288          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_FUSNN (ATP synthase gamma chain OS=Fusobacterium nucleatum subsp. nucleatum GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   59 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +T  + EL+   +FE     IL A++P ++N QI +A+  + ASE +AR ++MS+ATDNADE+ K L++ YN+ RQ+ IT E+ EIV GA AL
Sbjct:  190 ITRPEVELNSEYIFEPSTEYILSALLPRFINLQIYQAILNNTASEHSARKNSMSSATDNADEMIKTLNIKYNRNRQSAITQEITEIVGGASAL 282          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CORJK (ATP synthase gamma chain OS=Corynebacterium jeikeium (strain K411) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 2
Query:    8 LPMLTT-NEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            LP+ T   E K  +  D V+     ++    FE DP  +L A++P Y++  I  A+ ES ASE AAR +AMS ATDNA +L K LS   NQ RQA+IT E+ EIV GA AL
Sbjct:  209 LPIETVVEEEKFELGEDLVSDKVDHIAADYDFEPDPDTLLKALLPQYVSRGIFAAMLESAASESAARRTAMSAATDNATDLVKQLSRVANQARQAQITQEITEIVGGASAL 319          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BEUC1 (ATP synthase gamma chain OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 2
Query:   74 GELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            G++ PL  FE  P  +LDA++P Y+ S++  AL ++ ASE+AAR  AM TAT+NA++L +  +   N  RQA+IT E+ EIV+GA+A+
Sbjct:  207 GDVLPLYEFEPSPEAVLDALLPRYIRSRVFNALLQASASELAARQRAMHTATENAEDLIRKYTRLANTARQAEITQEISEIVSGADAM 294          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_AGRVS (ATP synthase gamma chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   98 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +E D A IL  ++P  +  QI RAL E+ A E+ A+MSAM  AT NA E+   L+++YN++RQAKIT EL+EI+AGAEAL
Sbjct:  214 YEPDAASILSDLIPRNIAVQIFRALLENAAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAKITTELIEIIAGAEAL 293          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_MYCPA (ATP synthase gamma chain OS=Mycobacterium paratuberculosis GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   77 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            E+  L  FE D   + ++++P Y+ +++  AL ES ASE+A+R  AM +ATDNAD+L K L++  N+ERQA+IT E+ EIV GA AL
Sbjct:  214 EVRTLYSFEPDATTLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANAL 300          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_MYCA1 (ATP synthase gamma chain OS=Mycobacterium avium (strain 104) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   77 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            E+  L  FE D   + ++++P Y+ +++  AL ES ASE+A+R  AM +ATDNAD+L K L++  N+ERQA+IT E+ EIV GA AL
Sbjct:  214 EVRTLYSFEPDATTLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANAL 300          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_HAES2 (ATP synthase gamma chain OS=Haemophilus somnus (strain 2336) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 2
Query:   47 ERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            E D+ +  K   +   ++E +P  +LD+++  Y+ SQ+ +A+ E+ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  193 ELDNDSLGKNSDNWEYIYEPNPQTLLDSLLVRYLESQVYQAVVENLASEQAARMVAMKAATDNAGNLINDLQLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_HAES1 (ATP synthase gamma chain OS=Haemophilus somnus (strain 129Pt) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 2
Query:   47 ERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            E D+ +  K   +   ++E +P  +LD+++  Y+ SQ+ +A+ E+ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  193 ELDNDSLGKNSDNWEYIYEPNPQTLLDSLLVRYLESQVYQAVVENLASEQAARMVAMKAATDNAGNLINDLQLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_GEOKA (ATP synthase gamma chain OS=Geobacillus kaustophilus GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:   98 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            FE    +ILD ++P Y  S I  AL ++ ASE AARM+AM  ATDNA+EL + L+++YN+ RQA IT E+ EIVAGA AL
Sbjct:  205 FEPSQEEILDVLLPQYAESLIYGALLDAKASEHAARMTAMKNATDNANELIRTLTLSYNRARQAAITQEITEIVAGANAL 284          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_PELLD1.713e-1549.38ATP synthase gamma chain OS=Pelodictyon luteolum (... [more]
ATPG_FUSNN1.713e-1546.24ATP synthase gamma chain OS=Fusobacterium nucleatu... [more]
ATPG_CORJK1.713e-1546.85ATP synthase gamma chain OS=Corynebacterium jeikei... [more]
ATPG_BEUC11.713e-1546.59ATP synthase gamma chain OS=Beutenbergia cavernae ... [more]
ATPG_AGRVS1.713e-1553.75ATP synthase gamma chain OS=Agrobacterium vitis (s... [more]
ATPG_MYCPA2.237e-1548.28ATP synthase gamma chain OS=Mycobacterium paratube... [more]
ATPG_MYCA12.237e-1548.28ATP synthase gamma chain OS=Mycobacterium avium (s... [more]
ATPG_HAES22.237e-1545.36ATP synthase gamma chain OS=Haemophilus somnus (st... [more]
ATPG_HAES12.237e-1545.36ATP synthase gamma chain OS=Haemophilus somnus (st... [more]
ATPG_GEOKA2.237e-1555.00ATP synthase gamma chain OS=Geobacillus kaustophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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