CF831959

Overview
NameCF831959
Unique NameCF831959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831959_ssr49 microsatellite CF831959_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12290 contig Csv1_Contig12290:487..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.894e-51
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFD+A P FL+IA+ RAGIVPIS+RR+ C K GGIRFT+NGH YFNLVLITNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L+GQSL F++T+SD RT TS N+ P NW
Sbjct:  122 DNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.473e-51
Identity = 89/124 (71.77%), Postives = 105/124 (84.68%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640
            GGWCNPP  HFD+A+P FL+IAQ +AG+VP+ +RR+ C +KGGIRFT+NGHSYFNLVLITNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L GQ+L F++T SDGRTV SNN  P NW
Sbjct:  117 GGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.219e-51
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP +HFD+A P FL IA+ +AGIVP+S+RRIPC KKGGIRFT+NG  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L+GQSL F++  SDGR+ TSNN+ P NW
Sbjct:  120 DNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.094e-50
Identity = 88/132 (66.67%), Postives = 110/132 (83.33%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP +HFD+AEPAFL+IA+  AGIVP+SFRR+ CA+KGG+RFTVNGH+YFNLVL+TNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL G++L F++TA DGR++T  +V P  W
Sbjct:  117 DGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.357e-49
Identity = 86/126 (68.25%), Postives = 100/126 (79.37%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFD+A P FL IA+ RAGIVP+S+RR+PC KKGG+RFT+NG  YFNLVLITNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L+GQ+L F++T SD RT TS N  P  W
Sbjct:  126 DNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.023e-49
Identity = 88/126 (69.84%), Postives = 103/126 (81.75%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP +HFD+A P FL+I   RAGIVP+S+RR+PC K GGIRFTVNG  YFNLVL+TNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ LIGQSL F++TASD R+ TS NV P  W
Sbjct:  124 DDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.949e-49
Identity = 84/126 (66.67%), Postives = 103/126 (81.75%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFD+A P FL+IA+ RAGIVP+SFRR+PC K+GGIRFT+NG  YFNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L+GQSL F++T+SD R+ TS N+ P NW
Sbjct:  119 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.501e-48
Identity = 84/127 (66.14%), Postives = 105/127 (82.68%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP  HFDM++P F +IA  +AGIVP+S+RR+ C KKGGIRFT+NGHSYFNLVL+TNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L GQ+L F++T  DGR+V SNN VP  W
Sbjct:  153 DDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.343e-48
Identity = 83/126 (65.87%), Postives = 103/126 (81.75%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP QHFDMAEPA+L+I     GIVP+ ++R+PCAK+GG+RFT+NG  YF LVL++NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL GQSL F++T+SDG+T+T  +V P  W
Sbjct:  123 DAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.696e-47
Identity = 81/129 (62.79%), Postives = 104/129 (80.62%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIK---GSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP  HFD+++PAFL+IA+ ++GIVP+S+RR+ C +KGG+RFT+NGHSYFNLVL++NVGGAGDVH+V++K   G K  WQAM+RNWGQNWQS + L GQ+L F +T  D R+V S NV P  W
Sbjct:  124 DRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGW 252          
The following BLAST results are available for this feature:
BLAST of CF831959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP16_ARATH1.894e-5169.84Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXP14_ARATH2.473e-5171.77Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA9_ARATH4.219e-5169.84Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA6_ORYSJ2.094e-5066.67Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ORYSJ1.357e-4968.25Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH3.023e-4969.84Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA6_ARATH3.949e-4966.67Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA5_ORYSJ1.501e-4866.14Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ3.343e-4865.87Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ3.696e-4762.79Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831959 ID=CF831959; Name=CF831959; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTGAACGCATTTATACCCGAATCATTCAATTGAAGTAATAACTA
TATATATAACACAATCATTTCTATTTATAGAGGCCTAACGGGTGCCAACA
GACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACC
TACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTA
AATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTC
AAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCA
CAGTCCTGCCGTCACTGGCTGTCAATTGGAAAAAAAGACTTTGGCCGATA
AGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTG
CCATCCAGTCTTTGAACCCTTGATTGATACTGAATGGACATCTCCTGCTC
CTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACG
GTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAAT
TGGGACGATACCGGCGCGGGATTGGGCAATTTGCAAGAAAGCGGGCTCAG
CCATGTCAAAGTGCTGGAAGGGAGGATTGCACCAACCGCCGTTGTC
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