CF831959
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34 Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = -1 Query: 269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640 GGWCN HFDM++PA+ I AGIVPI ++++ C + GG+RFT+ G +YF LVL+TN+ G+G + S+S+KGS TGW MSRNWG NWQ + L GQ+L F +T++ G+T+ ++VVP W Sbjct: 112 GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34 Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = -1 Query: 269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646 D GG CNPP +HF + AF +IA +AG +P+ +RRI C K+G +RFTV+G F VLITNV G+GD+ +V IKGS+TGW M RNWGQNW N+ L Q+L F++T+SD TVTS NV P NW Sbjct: 127 DGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 2.747e-34 Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = -1 Query: 269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640 GGWCN HFDM++PA+ I AGI+PI ++++ C + GG+RFT+NG +YF LVL+TN+ G+G + S+S+KGS TGW M+RNWG NWQ + L GQ+L F +T++ G+T+ ++ VP W Sbjct: 112 GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 235
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.181e-33 Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -1 Query: 269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646 D GGWCN P +H +++ AF IA++RA ++PI +RR+ C ++GG+RF+++G S+F VLI+NVG G+V V +KG T W M+RNWGQNW S+ LIGQSL F++T G+T+ S +V P W Sbjct: 118 DYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 8.838e-33 Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = -1 Query: 269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640 GGWCN +FDM++PA+ I AGIVPI ++++ C + GG+RF +NG +YF LVL+TN+ G+G + S+S+KGS TGW M+RNWG NWQ + L GQ+L F +T++ G+T+ ++ VP W Sbjct: 103 GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 226
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32 Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = -1 Query: 269 WCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 634 WC P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G+ +L NVGGAGD+ +VS KGSKT W MSR WGQNW +N L GQS+ ++T SDG T +V+P +W Sbjct: 129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASW 250
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31 Identity = 60/126 (47.62%), Postives = 90/126 (71.43%), Query Frame = -1 Query: 269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTA-SDGRTVTSNNVVPGNW 640 GGWCNPP HFD+++PAF+++A RAGIVP+ +RR+PCA+ GG+RF + G+ Y+ L + NV GAGDV + +K G GW MS NWG ++Q+ + L GQ+L F++T+ + G+T+ + V P +W Sbjct: 128 GGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.554e-28 Identity = 51/117 (43.59%), Postives = 83/117 (70.94%), Query Frame = -1 Query: 269 QHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 616 +HFD+ PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G+ +N+V++ NVGGAGDV +++KG+K W + R+WGQ W++ + L G+SL F++ D R TS V P +W Sbjct: 162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27 Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = -1 Query: 299 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTV 646 D+GGWCNPP HFDMA P+FL++AQ AGIVP+ +RR+PC + GG+RF + G+ Y+ L+ + NVGGAGDV S+S+K S G W + NWG +Q +F L SDG TV Sbjct: 141 DDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQ---------VFAALDNSDGLTV 249
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13 Identity = 43/138 (31.16%), Postives = 70/138 (50.72%), Query Frame = -1 Query: 269 GGWCNPPFQHFDMAEPAFLQIAQS-------RAGIVPISFRRIPCAKKGGIRFTVNGHS--YFNLVLITNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYL---IGQSLFFQLTASDGRTVTSNNVVPGNW 640 GG C HFDM+ AF +A AG++ I ++R+PC + F V+ S Y+ +L+ G GD+ +V I ++ G W+AM ++WG W+ NS + +LT+ G+ + +NNV+P W Sbjct: 124 GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGW 261 The following BLAST results are available for this feature:
BLAST of CF831959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF831959 ID=CF831959; Name=CF831959; organism=Citrus sinensis; type=EST; length=646bpback to top |