CF831959

Overview
NameCF831959
Unique NameCF831959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831959_ssr49 microsatellite CF831959_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12290 contig Csv1_Contig12290:487..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQS-------RAGIVPISFRRIPCAKKG-GIRFTVN--GHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSL----FFQLTASDGRTVTSNNVVPGNW 640
            GG C     HFDM+  +   +A+         AGI+ + +RR+PC   G  I F V+   + ++  VLI    G GD+++V +  +  GW  M +NWG  W+ NS   G++L      +LT+  G+ + +NNV+P +W
Sbjct:  143 GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASW 279          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 42/141 (29.79%), Postives = 69/141 (48.94%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQS-------RAGIVPISFRRIPCAKKG---GIRFTVNGHSYFNLVLITNVGGAGDVHSVSI-----KGSKTGWQAMSRNWGQNWQSNS--YLIGQSLFFQLTASDGRTVTSNNVVPGNW 640
            GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G     R     + Y+  VL+ +  G GD+ +V +      G    W AM ++WG  W+ NS    +   +  +LT+  GRT+ ++NV+P  W
Sbjct:  117 GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNSGPAPLQAPMSIRLTSGSGRTLVASNVIPAGW 257          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 43/138 (31.16%), Postives = 70/138 (50.72%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQS-------RAGIVPISFRRIPCAKKGGIRFT----VNGHSYFNLVLITNVGGAGDVHSVSIK--GSKTGWQAMSRNWGQNWQSNSYLIGQSLF-FQLTASDGRTVTSNNVVPGNW 640
            GG C     HFD++  AF  +A          AG++ I + R+PC   GG++ T    V  +  +  VL+    G GD+  V +   G+   W  M ++WG  W+ N+    Q+ F  +LT+S G+T+ ++NV+P  W
Sbjct:  116 GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGW 252          
The following BLAST results are available for this feature:
BLAST of CF831959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXB11_ORYSJ2.263e-1232.61Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ3.860e-1229.79Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ2.502e-1131.16Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831959 ID=CF831959; Name=CF831959; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTGAACGCATTTATACCCGAATCATTCAATTGAAGTAATAACTA
TATATATAACACAATCATTTCTATTTATAGAGGCCTAACGGGTGCCAACA
GACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACC
TACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTA
AATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTC
AAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCA
CAGTCCTGCCGTCACTGGCTGTCAATTGGAAAAAAAGACTTTGGCCGATA
AGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTG
CCATCCAGTCTTTGAACCCTTGATTGATACTGAATGGACATCTCCTGCTC
CTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACG
GTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAAT
TGGGACGATACCGGCGCGGGATTGGGCAATTTGCAAGAAAGCGGGCTCAG
CCATGTCAAAGTGCTGGAAGGGAGGATTGCACCAACCGCCGTTGTC
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