CF831960

Overview
NameCF831960
Unique NameCF831960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.466e-53
Identity = 98/169 (57.99%), Postives = 129/169 (76.33%), Query Frame = -2
Query:  200 GDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 706
            GD S R  +Y ++     + A+  +  +  F+ S SAS DVLAM+  EVDLS I  G  + VKW+GKPVFIR RT E+I+ ANSVD+ +LRDPQ D++RV+ PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIR+GPAP NL +P+Y+F + +K++IG
Sbjct:   62 GDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTF-EGSKIIIG 228          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.466e-53
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTGDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.106e-52
Identity = 88/165 (53.33%), Postives = 122/165 (73.94%), Query Frame = -2
Query:  200 KRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 694
            ++ F+Y V        A   + ++ +F+ S+SAS DVLA++ +E+ LS I  G  V  KWRGKP+F+R RT+ +I     VD+  LRDPQ D +RVK PEW+++VGVCTHLGC+P+ N+GDFGG++CPCHGSHYD SGRIRKGPAPYNLEVP+Y F+ ++ +++G
Sbjct:  108 RKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 272          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.106e-52
Identity = 90/166 (54.22%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVPSY F  ++ +++G
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.444e-52
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSDDLVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.886e-52
Identity = 96/212 (45.28%), Postives = 136/212 (64.15%), Query Frame = -2
Query:  200 PATVAAGKNPTSKIVY--------DEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 784
            P   + G N  + + Y        D Y++ R    D +K         + F+Y V        A   +  + +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++G+CTHLGC+P+ NAGDFGG++CPCHGSHYD+SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:   63 PLVASVGLNVPASVCYSHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLGCVPIANAGDFGGYYCPCHGSHYDVSGRIRLGPAPLNLEVPPYEFTSDDMVVVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.202e-52
Identity = 90/166 (54.22%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            ++++F+Y V        A   +  + +FV SMSAS DVLAMA +EV LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVVVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_CERAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cercopithecus aethiops GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.487e-52
Identity = 97/212 (45.75%), Postives = 136/212 (64.15%), Query Frame = -2
Query:  200 PATVAAGKNPTSKIVY--------DEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 784
            P   + G N  + + Y        D Y++ R    D +K         + F+Y V        A   + ++ +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:   63 PLVASVGLNVPASVCYSHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPPYEFTGDDVVVVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.167e-52
Identity = 89/166 (53.61%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   + ++ +FV SMSAS DVLA+A +E+ LS I  G  +T KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPIYEFTSDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.360e-52
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPAYEFTSDDVVVVG 274          
The following BLAST results are available for this feature:
BLAST of CF831960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_SCHPO8.466e-5357.99Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_LAGLA8.466e-5353.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CHICK1.106e-5253.33Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_BOVIN1.106e-5254.22Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ1.444e-5253.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE1.886e-5245.28Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO4.202e-5254.22Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CERAE5.487e-5245.75Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PONPY7.167e-5253.61Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE9.360e-5253.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831960 ID=CF831960; Name=CF831960; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTAGGTTAAAAGACAATGTGTCAAAACCAGGCCACTT
ATTCTGAGTTGCAGTATCCCAACCCCAATGAAAGGGTGGCAAGACACAAA
GATAGGCATTTATCTTCGACATTATCTGATAAAATATTTTAAAAAAAAAT
GAGATCCCGAATAACCATGGATCACCGGGACAGGACGTCACACTTATCAA
CCAATGAGCATCTTGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAA
ATTGTATGGTGCTGGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAG
AACCATGGCAAGGGCAAAACCATCCACCAAAGTCACCAGCATTTGGCAAA
GGAATGCAACCAAGATGTGTGCAGACCCCAACAACTACAAGCCACTCCGG
GTTTTTAACCCTCTCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAAT
CAACACTGTTGGCCAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAA
ACTGGCTTGCCCCGCCACTTAACAGTCACTGTGCTGCCTGGCTCAATGCT
GGACAGATCAACCTCAAGAGAGGCCATAGCAAGAACATCCTTACTCGCTG
ACATGCTCAGTACAAATTTAAGGATAAGTAGACGGATGAGTGAAGCATAC
ACAAACCTACCACCAGTCAGGACAAAGTAGGCAAATGCCCGCTTGCTGGG
GTCACCTGGAGGATAACGTTCATGATTGTATTCATCATATACTATCTTAG
AAGTGGGATTCTTACCAGCTGCCACTGTTGCTGGAACACCTGGAACC
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