CF831960

Overview
NameCF831960
Unique NameCF831960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:294..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_HYLSY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates syndactylus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.360e-52
Identity = 96/203 (47.29%), Postives = 129/203 (63.55%), Query Frame = -2
Query:  200 VPATVAAGKNPTSKIVYDEYNHERYPPGDPSKR-------AFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 787
            VPA+V           + EY          S R        F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:   72 VPASVCYSHTDVKVPDFSEYRRPEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKRPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.085e-51
Identity = 89/166 (53.61%), Postives = 121/166 (72.89%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   +  + +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F   + +++G
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSGDVVVVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.085e-51
Identity = 88/166 (53.01%), Postives = 122/166 (73.49%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.085e-51
Identity = 88/166 (53.01%), Postives = 122/166 (73.49%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.085e-51
Identity = 88/166 (53.01%), Postives = 122/166 (73.49%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.085e-51
Identity = 88/166 (53.01%), Postives = 122/166 (73.49%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.067e-51
Identity = 88/166 (53.01%), Postives = 121/166 (72.89%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++IK   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPA  NLEVP+Y F  ++ +++G
Sbjct:  118 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPATLNLEVPTYEFTSDDMVIVG 283          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.329e-49
Identity = 98/183 (53.55%), Postives = 122/183 (66.67%), Query Frame = -2
Query:  200 EYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN-----AGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 733
            E  H    PG  S R    F++ G   V A  + L +  F+  M+ + D LA+AS EVD+S+I  G  +TV WRGKPVF+R RT+++I +A +VD  SLRDPQ D  RV+  +WLV+VGVCTHLGCIPL        GDF GWFCPCHGSHYD +GRIRKGPAP NL VP Y+F D+  +LIG
Sbjct:    3 EAEHTASTPGGESSRRD--FLIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVCTHLGCIPLGQKAGDPKGDFDGWFCPCHGSHYDSAGRIRKGPAPLNLPVPPYAFTDDTTVLIG 183          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.309e-45
Identity = 89/181 (49.17%), Postives = 119/181 (65.75%), Query Frame = -2
Query:  200 DEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 736
            D  N  +    D SK +   F++     V A      +   + S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V +  L DP++D +RVK  +  WLV +G+CTHLGC+PL N GD+ GWFCPCHGS YD SGR+R+GPAP NL VP Y+F+ + K+ IG
Sbjct:    6 DTNNDNKVEFEDRSKTSRRDFMVLTASSVAAVGAACTLWPLINSLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIGICTHLGCVPLANQGDYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 186          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 80/138 (57.97%), Postives = 103/138 (74.64%), Query Frame = -2
Query:  200 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 607
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V +  L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+R+GPAP NL VP Y+F+ + K+ IG
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 177          
The following BLAST results are available for this feature:
BLAST of CF831960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_HYLSY9.360e-5247.29Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT2.085e-5153.61Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR2.085e-5153.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA2.085e-5153.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN2.085e-5153.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_GORGO2.085e-5153.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRIL_HUMAN6.067e-5153.01Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_RHORU3.329e-4953.55Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICBR1.309e-4549.17Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE7.183e-4457.97Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831960 ID=CF831960; Name=CF831960; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTAGGTTAAAAGACAATGTGTCAAAACCAGGCCACTT
ATTCTGAGTTGCAGTATCCCAACCCCAATGAAAGGGTGGCAAGACACAAA
GATAGGCATTTATCTTCGACATTATCTGATAAAATATTTTAAAAAAAAAT
GAGATCCCGAATAACCATGGATCACCGGGACAGGACGTCACACTTATCAA
CCAATGAGCATCTTGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAA
ATTGTATGGTGCTGGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAG
AACCATGGCAAGGGCAAAACCATCCACCAAAGTCACCAGCATTTGGCAAA
GGAATGCAACCAAGATGTGTGCAGACCCCAACAACTACAAGCCACTCCGG
GTTTTTAACCCTCTCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAAT
CAACACTGTTGGCCAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAA
ACTGGCTTGCCCCGCCACTTAACAGTCACTGTGCTGCCTGGCTCAATGCT
GGACAGATCAACCTCAAGAGAGGCCATAGCAAGAACATCCTTACTCGCTG
ACATGCTCAGTACAAATTTAAGGATAAGTAGACGGATGAGTGAAGCATAC
ACAAACCTACCACCAGTCAGGACAAAGTAGGCAAATGCCCGCTTGCTGGG
GTCACCTGGAGGATAACGTTCATGATTGTATTCATCATATACTATCTTAG
AAGTGGGATTCTTACCAGCTGCCACTGTTGCTGGAACACCTGGAACC
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