CF831960

Overview
NameCF831960
Unique NameCF831960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:294..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 80/138 (57.97%), Postives = 103/138 (74.64%), Query Frame = -2
Query:  200 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 607
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V +  L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+R+GPAP NL VP Y+F+ + K+ IG
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 177          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 89/180 (49.44%), Postives = 116/180 (64.44%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRD-----------PQQDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            ++R F Y+   G   V A      ++     M+ S DV A+AS++VD+S +E G+ +TVKW GKPVFIRRRTE++I+    VDLG L D           P  D  R  +   EWLV++GVCTHLGC+P+ + AGDFGGWFCPCHGSHYD SGRIR+GPAP NL +P   FLD+  + +G
Sbjct:   14 TRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGSHYDTSGRIRRGPAPQNLHIPVAEFLDDTTIKLG 190          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 79/138 (57.25%), Postives = 103/138 (74.64%), Query Frame = -2
Query:  200 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 607
            S + S DVLA++S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A +V +  L DP++D  RVK  +  WLV +G+CTHLGC+PL + G++ GWFCPCHGS YD SGR+RKGPAP NL VP Y F+ + K+ IG
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLGCVPLSHKGEYNGWFCPCHGSQYDSSGRVRKGPAPLNLAVPPYIFISDKKIRIG 177          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 88/156 (56.41%), Postives = 111/156 (71.15%), Query Frame = -2
Query:  200 MSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNP--------------------EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 604
            M+AS DV AMAS+ VD+S++E G+ +TVKWRGKPVFIRRR E+DI+LA SV LG+LRD    AE    P                    EWLV++GVCTHLGC+P+ + +GDFGGWFCPCHGSHYD +GRIRKGPAP NL++P  +F+DE  + +G
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTS--AENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTIKLG 191          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.730e-43
Identity = 80/138 (57.97%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  200 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 607
            S++ S DVLA++S+EVDLSSI  G TVTVKW+GKP+FI  RT + I  A +V +  L DP++D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+RKGPA  NL VP Y F+ + K+ IG
Sbjct:   40 SLNPSTDVLALSSIEVDLSSIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIGICTHLGCVPLSNQGEYNGWFCPCHGSQYDSSGRVRKGPASLNLVVPPYIFISDTKIRIG 177          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.709e-41
Identity = 88/181 (48.62%), Postives = 112/181 (61.88%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQ------------DAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            ++R F Y+   G   V        +   +  M+ S DV A+AS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  SV LG L D               D  R  +   EWLV+ GVCTHLGC+P+   +GDFGGWFCPCHGSHYD +GRIRKGPAP NL +P   F+DE  + +G
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 187          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.268e-40
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = -2
Query:  200 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 703
            + ++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++I+   + D+G+L DPQ D+ RVK    EWLVV   CTHLGCIPL + GD+GGWFCPCHGS YD SGR+RKGPAP NL VP Y F+D  K+ IG
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLGCIPLGHQGDWGGWFCPCHGSQYDASGRVRKGPAPTNLPVPPYEFVDNTKIRIG 175          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.087e-39
Identity = 82/170 (48.24%), Postives = 109/170 (64.12%), Query Frame = -2
Query:  200 PSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN--PEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 700
            P++R F  FV TG          L    F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A +V++ SL DPQ D  RVK+   +WLVV+G+CTHLGCIP+ + G++ G+FCPCHGS YD SGRIR+GPAP NL VP Y F+ + K+ IG
Sbjct:   10 PTRRDFL-FVATGAAAAVGGAAALW--PFISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLGCIPIAHEGNYDGFFCPCHGSQYDSSGRIRQGPAPANLPVPPYQFVSDTKIQIG 176          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_CHRVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Chromatium vinosum GN=petA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.990e-23
Identity = 64/163 (39.26%), Postives = 93/163 (57.06%), Query Frame = -2
Query:  200 ILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDP----QQDAERVKN------PEWLVVVGVCTHLGCIPL---------PNAGDFGGWFCPCHGSHYDISGRIRKG-PAPYNLEVPSYSFLDENKMLIG 625
            ++ FV SM+ S    A  A +E D+S +EPG+ + VKWRG PV++  R+ E +   +S D   L DP     Q  +  KN      PE+LV +G+CTHLGC P            +G  GG+ CPCHGS +D++ R+ K  PAP NL +P + +L++  +LIG
Sbjct:   40 LVPFVASMNPSARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVHRSSEMLAALSSND-PKLVDPTSEVPQQPDYCKNPTRSIKPEYLVAIGICTHLGCSPTYRPEFGPDDLGSGWKGGFHCPCHGSRFDLAARVFKNVPAPTNLVIPKHVYLNDTTILIG 201          
The following BLAST results are available for this feature:
BLAST of CF831960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_RICCN7.183e-4457.97Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE7.183e-4449.44Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICPR9.382e-4457.25Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA9.382e-4456.41Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICTY2.730e-4357.97Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH9.709e-4148.62Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI1.268e-4047.95Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA9.087e-3948.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_CHRVI6.990e-2339.26Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831960 ID=CF831960; Name=CF831960; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTAGGTTAAAAGACAATGTGTCAAAACCAGGCCACTT
ATTCTGAGTTGCAGTATCCCAACCCCAATGAAAGGGTGGCAAGACACAAA
GATAGGCATTTATCTTCGACATTATCTGATAAAATATTTTAAAAAAAAAT
GAGATCCCGAATAACCATGGATCACCGGGACAGGACGTCACACTTATCAA
CCAATGAGCATCTTGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAA
ATTGTATGGTGCTGGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAG
AACCATGGCAAGGGCAAAACCATCCACCAAAGTCACCAGCATTTGGCAAA
GGAATGCAACCAAGATGTGTGCAGACCCCAACAACTACAAGCCACTCCGG
GTTTTTAACCCTCTCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAAT
CAACACTGTTGGCCAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAA
ACTGGCTTGCCCCGCCACTTAACAGTCACTGTGCTGCCTGGCTCAATGCT
GGACAGATCAACCTCAAGAGAGGCCATAGCAAGAACATCCTTACTCGCTG
ACATGCTCAGTACAAATTTAAGGATAAGTAGACGGATGAGTGAAGCATAC
ACAAACCTACCACCAGTCAGGACAAAGTAGGCAAATGCCCGCTTGCTGGG
GTCACCTGGAGGATAACGTTCATGATTGTATTCATCATATACTATCTTAG
AAGTGGGATTCTTACCAGCTGCCACTGTTGCTGGAACACCTGGAACC
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