CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.319e-26
Identity = 52/101 (51.49%), Postives = 75/101 (74.26%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM MA+VKKG P++R KV+ +V++RQ +P+ R DG  + FEDNA V+V P GE++GS I GP+
Sbjct:   13 PLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPV 113          

HSP 2 Score: 23.8682 bits (50), Expect = 5.319e-26
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            +E  + WPRIA+ A+ IV
Sbjct:  115 REAAERWPRIAAIASIIV 132          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.588e-25
Identity = 51/101 (50.50%), Postives = 75/101 (74.26%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM +A+VKKG P++R KV+ +V++RQ +P+ R DG  + FEDNA V+V P GE++GS I GP+
Sbjct:   13 PLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPV 113          

HSP 2 Score: 23.8682 bits (50), Expect = 2.588e-25
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            +E  + WPRIA+ A+ IV
Sbjct:  115 REAAERWPRIAAIASIIV 132          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.371e-25
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = -1
Query:  167 VAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 466
            V   + CADN+GAK L  I VK   GRL RLP+A  GD+ + +VKKGKP+LRKKV  ++++RQ K W R DG  + FEDNA V++N KGE++G+ I GP+
Sbjct:   28 VETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPV 127          

HSP 2 Score: 24.6386 bits (52), Expect = 7.371e-25
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            +E  D+WP+I+S A++I
Sbjct:  129 REVADMWPKISSQASSI 145          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.775e-24
Identity = 51/101 (50.50%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P+ AT+ C DNTGA+ + IISVKG  G   RL  A VGD+V+A+VKKG  D+R++V+ +V++RQ K + R DG+ + FEDNA VI+ P+G ++GS + GP+
Sbjct:   13 PIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPV 113          

HSP 2 Score: 24.6386 bits (52), Expect = 2.775e-24
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            KE  D WP + SAA+ +V
Sbjct:  115 KEAADRWPSVGSAASILV 132          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.788e-24
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A + CADNTGA+ L II+VKG  G   RLP+A +GDMV+ +VK+G PD+RK+V+ +VIVRQ K + R DG  + FEDNA VIV P G  +GS I GP+
Sbjct:   14 PVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPV 114          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METM7 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.642e-24
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGAK L II+VK  TG + RLP+  VG MV  +VKKG P++RK+V+P++I+RQ K + R DG  + FEDNA VIV P+G  +GS I GP+
Sbjct:   13 PNGARLVCADNTGAKELEIIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METM6 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.756e-24
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGAK L +I+VK  TG + RLP+  VG MV  +VKKG P++RK+V+P++I+RQ K + R DG  + FEDNA VIV P+G  +GS I GP+
Sbjct:   13 PNGARLVCADNTGAKELEVIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.117e-24
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A + C DNTGA+ + IISV+G  G   RL +A VGDMV+ +VKKG  D+R++V+ +VIVRQ K + R DG+ + FEDNA VIV+P+G ++GS I GP+
Sbjct:   13 PVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPV 113          

HSP 2 Score: 25.409 bits (54), Expect = 6.117e-24
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            KE  D WP + SAA+ IV
Sbjct:  115 KEAADRWPSVGSAASIIV 132          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.212e-24
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGAK L +I+VK  +G + RLPSA VG +V  +VKKG P++RK+V+P++I+RQ K + R DG  + FEDNA VIV P+G  +GS I GP+
Sbjct:   13 PNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.212e-24
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGAK L +I+VK  +G + RLPSA VG +V  +VKKG P++RK+V+P++I+RQ K + R DG  + FEDNA VIV P+G  +GS I GP+
Sbjct:   13 PNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPV 113          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_THEAC5.319e-2651.4950S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL14_THEVO2.588e-2550.5050S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL23_ENCCU7.371e-2553.0060S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_METS32.775e-2450.5050S ribosomal protein L14P OS=Methanobrevibacter s... [more]
RL14_METKA2.788e-2456.4450S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_METM73.642e-2454.4650S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METM64.756e-2453.4750S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METTH6.117e-2453.4750S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METVS6.212e-2453.4750S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA6.212e-2453.4750S ribosomal protein L14P OS=Methanococcus vannie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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