CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.607e-19
Identity = 43/98 (43.88%), Postives = 72/98 (73.47%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLI--RLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            VN ADN+GAK + +I V G   + +  R+P   VGDMV+ +V++GKP++RK+++ +++VRQ +P+ R DG ++ FEDNA VIV  +G+++G+ + GP+
Sbjct:   28 VNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPV 125          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = -1
Query:  167 ATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 460
            A V C DNTGAK + IISVK   G   R+P A +GDM + +VKKG P++RK+V+ +V+VRQ + + R DG+ + FEDNA VI + +G  +G+ I GPI
Sbjct:   16 AKVPCVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPI 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = -1
Query:  167 ATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 460
            A + C DNTGAK + IISVK   G   R+P A +GDM + +VKKG P++RK+V+ +V+VRQ + + R DG+ + FEDNA VI + +G  +G+ I GP+
Sbjct:   16 AQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.340e-18
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            V CADNTGA+ L +ISV G +G   R P A +GD V  +V KG P++R++V+ +VIVRQ K   R DG  + FEDNA VI++   E +G+ I GPI
Sbjct:   18 VTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPI 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.340e-18
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+ L +ISV G +G   R P A +GD +  +V KG P++R++V+ +V+VRQ KP  R DG  + FEDNA VIV+   + +G+ + GPI
Sbjct:   18 ITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPI 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.340e-18
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+ L +ISV G +G   R P A +GD V  +V KG P++R++V+ +V+VRQ KP  R +G  + FEDNA VI++   E +G+ I GP+
Sbjct:   18 ITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_THEPD (50S ribosomal protein L14P OS=Thermofilum pendens (strain Hrk 5) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.751e-18
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            V  ADN+GA    +I V        R+P A VGD+V+ +++ GKP+LRK+VM ++++RQ +P+ R DG ++ FEDNA VI+ P+GE +G+ I GP+
Sbjct:   27 VKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIVIVSIRAGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPL 122          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.751e-18
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = -1
Query:  167 ATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 460
            A + C DNTGAK + IISVK   G   R+P A +GDM + +VKKG P++RK+++ +V+VRQ + + R DG+ + FEDNA VI +  G  +G+ I GP+
Sbjct:   16 AQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+ L + S+ G +G   R P A +GD +  +V KG P++R++V+ +V++RQ KP  R DG  + FEDNA VIV+   + +G+ + GPI
Sbjct:   18 ITCADNTGARELKVTSISGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPI 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.688e-18
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+ + I+SV G  G   R P   +GD+   TVKKG PD+RKK++ +V++RQ K   R +G+ + F+DNA V+V+ K E +G+ I GP+
Sbjct:   18 LTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPV 113          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_CALMQ4.607e-1943.8850S ribosomal protein L14P OS=Caldivirga maquiling... [more]
RL14_METBF7.858e-1950.0050S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_METAC7.858e-1947.9650S ribosomal protein L14P OS=Methanosarcina aceti... [more]
RL14_HALWD1.340e-1850.0050S ribosomal protein L14P OS=Haloquadratum walsby... [more]
RL14_HALMA1.340e-1846.8850S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_HALLT1.340e-1846.8850S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_THEPD1.751e-1844.7950S ribosomal protein L14P OS=Thermofilum pendens ... [more]
RL14_METMA1.751e-1846.9450S ribosomal protein L14P OS=Methanosarcina mazei... [more]
RL14_NATPD6.652e-1843.7550S ribosomal protein L14P OS=Natronomonas pharaon... [more]
RL14_METB68.688e-1845.8350S ribosomal protein L14P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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