CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.312e-17
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = -1
Query:  167 CADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 448
            CADNTGA+ + I+SV G  G   R P   +GD+   TVKKG PD+++K++ +V+VRQ K + R +G+ + FE+NA +++N  G+ +G+ I GP+
Sbjct:   20 CADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  167 AATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 463
            A  +  ADNTGA+ + +ISV    GR  R+P A +GD+ + +VKKG P++RK ++  V++RQ K + R  G+ + FEDNA V+V+   + +G+ I GP+
Sbjct:   15 ATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNA-GVIVNPKGEMQGSAITGPI 469
            PV A +N ADN+GAK + +I+VKG  GR  RL  A + D+V+ +V+ GKPD+  ++  +V+VR  K W R+DG  + FEDNA  ++ +  G  +G+ I  PI
Sbjct:   13 PVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPI 114          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+ + ++SV G  G   R P   + D+   +VKKG PD+R+K++ +V++RQ K   R  G+ + FEDNA V+V+ K E +G+ I GP+
Sbjct:   18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.812e-15
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  167 CADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 448
            C+DNTGA+ + ++SV    G   R P   +GD+   +VKKG PD+R+K+  +V++RQ K   R +G+ + FEDNA V++N +GE +G+ I G +
Sbjct:   20 CSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.090e-15
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADNTGAK +  I+V G + +L     A VGD+++A VKK  PD + K   V+ +V+VR  KP+ R DG ++ F+DNA VI+N K E +G+ I GP+
Sbjct:    8 LNVADNTGAKKIMCINVLGGSRKL----QAKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADNTGAK +  I+V G + ++     A VGD+++A VKK  PD + K   V+ +V+VR  KP+ R DG ++ F+DNA VI+N K E +G+ I GP+
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKI----QAKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADNTGAK +  I+V G + ++     A VGD+++A VKK  PD + K   V+ +V+VR  KP+ R DG ++ F+DNA VI+N K E +G+ I GP+
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKI----QAKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I + G + R      A +GD+++A VK+  P++   + +V+ +V+VR CK   RK+G  + F+DNA VI+N +G  +G+ + GP+
Sbjct:    8 LNVADNSGARKLMCIQILGASNRKY----AHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_STAPU (50S ribosomal protein L14, chloroplastic OS=Staurastrum punctulatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G + R      A +GDM++A VK+  P++   + +V+ +VIVR CK   R +G+ + F+DNA V+VN +G  +G+ + GP+
Sbjct:    8 LNVADNSGARRLMCIRVLGSSNRKY----ANIGDMIIAVVKEAVPNMPLKKSEVVRAVIVRTCKGIKRNNGMILRFDDNAAVVVNQEGNPRGTRVFGPV 102          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_METLZ4.312e-1743.6250S ribosomal protein L14P OS=Methanocorpusculum l... [more]
RL14_UNCMA2.140e-1641.4150S ribosomal protein L14P OS=Uncultured methanoge... [more]
RL14_NANEQ2.140e-1643.1450S ribosomal protein L14P OS=Nanoarchaeum equitan... [more]
RL14_METHJ2.140e-1642.7150S ribosomal protein L14P OS=Methanospirillum hun... [more]
RL14_METMJ1.812e-1541.4950S ribosomal protein L14P OS=Methanoculleus maris... [more]
RL14_DEHE13.090e-1545.4550S ribosomal protein L14 OS=Dehalococcoides ethen... [more]
RL14_DEHSC5.271e-1544.4450S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_DEHSB5.271e-1544.4450S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RK14_PHYPA6.443e-1337.3750S ribosomal protein L14, chloroplastic OS=Physco... [more]
RK14_STAPU8.415e-1339.3950S ribosomal protein L14, chloroplastic OS=Staura... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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