CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_DESVV (50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = -1
Query:  167 VAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 466
            V +T+  ADN+GAK +  I V G + R      A VGD++M +VK+  P  + K   VM +VIVR  K   R DG ++ F+ NA V++N +GE  G+ I GP+
Sbjct:    4 VESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_DESVH (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = -1
Query:  167 VAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 466
            V +T+  ADN+GAK +  I V G + R      A VGD++M +VK+  P  + K   VM +VIVR  K   R DG ++ F+ NA V++N +GE  G+ I GP+
Sbjct:    4 VESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.587e-11
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADN+GAK +  I V G TGR      A +GD +M TVK   P     +K+V  +V+VR  K   RKDG ++ F++NA V++N +GE +G+ I GP+
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_ANGEV (50S ribosomal protein L14, chloroplastic OS=Angiopteris evecta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.587e-11
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G + R      A  GD+++A VK+  P++   + +V+ +V+VR CK   R +G+ + F+DNA V++N +G  +G+ + GPI
Sbjct:    8 LNVADNSGARKLMCIRVLGTSDR----EYADTGDVIVAVVKEAVPNMPLKKSEVVRAVVVRTCKELKRDNGMRIRFDDNAAVVINQEGNPRGTRVFGPI 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SYNFM (50S ribosomal protein L14 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GAK LY I V G T    R   A VGD+++ +VK+  P+ + K   V+ +V+VR  K   R DG ++ F+DN+ V++N   E  G+ I GP+
Sbjct:    8 LNAADNSGAKRLYCIKVLGGT----RKRYASVGDIIVVSVKEAIPNAKVKKGDVLKAVVVRTQKEVRRPDGSYIKFDDNSAVLINQAKEPIGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_WHEAT (50S ribosomal protein L14, chloroplastic OS=Triticum aestivum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ +VIVR CK +  +DG+ + ++DNA VI++ KG  +G+ + G I
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQ---RYARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAI 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_LOLPR (50S ribosomal protein L14, chloroplastic OS=Lolium perenne GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ +VIVR CK +  +DG+ + ++DNA VI++ KG  +G+ + G I
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQ---RYARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAI 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_HORVU (50S ribosomal protein L14, chloroplastic OS=Hordeum vulgare GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ +VIVR CK +  +DG+ + ++DNA VI++ KG  +G+ + G I
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQ---RYARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAI 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_BRADI (50S ribosomal protein L14, chloroplastic OS=Brachypodium distachyon GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ +VIVR CK +  +DG+ + ++DNA VI++ KG  +G+ + G I
Sbjct:    8 LNVADNSGARKLMCIRVIGTAGNQ---RYARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAI 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_AGRST (50S ribosomal protein L14, chloroplastic OS=Agrostis stolonifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ +VIVR CK +  +DG+ + ++DNA VI++ KG  +G+ + G I
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQ---RYARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAI 103          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_DESVV1.215e-1140.7850S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_DESVH1.215e-1140.7850S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_CHLPB1.587e-1142.7150S ribosomal protein L14 OS=Chlorobium phaeobacte... [more]
RK14_ANGEV1.587e-1137.3750S ribosomal protein L14, chloroplastic OS=Angiop... [more]
RL14_SYNFM3.536e-1140.4050S ribosomal protein L14 OS=Syntrophobacter fumar... [more]
RK14_WHEAT3.536e-1137.3750S ribosomal protein L14, chloroplastic OS=Tritic... [more]
RK14_LOLPR3.536e-1137.3750S ribosomal protein L14, chloroplastic OS=Lolium... [more]
RK14_HORVU3.536e-1137.3750S ribosomal protein L14, chloroplastic OS=Hordeu... [more]
RK14_BRADI3.536e-1137.3750S ribosomal protein L14, chloroplastic OS=Brachy... [more]
RK14_AGRST3.536e-1137.3750S ribosomal protein L14, chloroplastic OS=Agrost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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