CF831984

Overview
NameCF831984
Unique NameCF831984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2636 contig Csv1_Contig2636:93..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27
Identity = 64/156 (41.03%), Postives = 103/156 (66.03%), Query Frame = -1
Query:  296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757
            K ++ PR P+E ERL+ E +L+ +YGLR K+ELWR Q  L R R  A++L+   +   +R  E EAL R+++  G L++   +  LD +L LTVE+ LERRLQT+V++ G+ K+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:    9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.552e-27
Identity = 69/157 (43.95%), Postives = 101/157 (64.33%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG--EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K ++ PR P+ KE L  EL+L+G YGLR KRELWR Q  + + R+ AR LL      P+ I E   +ALL R++R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+ ++I HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:    9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAA----PQEIREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.698e-27
Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = -1
Query:  290 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 757
            K    PR P+EKERL  E +LVG YGL+ K ELW ++   ++ +  AR LLT    NP  I   G +LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ  VF +G+ KS+ HAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:    8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.286e-26
Identity = 67/159 (42.14%), Postives = 98/159 (61.64%), Query Frame = -1
Query:  281 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 757
            K +  P+ P+ KERL  EL LVG YGLR KRELW+++      R+ AR LL L  +   +  E +ALL R++  G L E+   LD VL LT E+FLERRLQT+V+K G+ ++I  AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:    9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.829e-25
Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = -1
Query:  296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757
            K +  PR P+EKER+D E ++V +YGL+ K+E+WR +  LS IR+ ARDL   L  ++ N ++  + E +++R++RY  L E+   LD VL+LTVEN L+RRLQT+VF+  +  S+  AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.389e-25
Identity = 65/156 (41.67%), Postives = 96/156 (61.54%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K +  PR P+EK+R+DAE +L+ +YGL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   L E+   LD VL+L +E+ LERRL+TLV+K  +  ++  AR  I   HI+V  ++V IPSF+V    +  I ++ TSPF
Sbjct:    9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = -1
Query:  266 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 757
            KT++ P  P+ KER++ E  L  +YGLR KRE+W+ +  L + R  AR L++  ++  +   E   L   + +YG L+     LD VL+LTVE+ LERRLQTLVF+ G+ ++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF     P R K
Sbjct:   10 KTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.321e-25
Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K+++ P+RP+EK R++ E RLV EYGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G L    + +D VLAL V   LERRLQTLV++ G+ +S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.548e-24
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = -1
Query:  281 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 757
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+ ++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.548e-24
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = -1
Query:  296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757
            K ++ P  P+ KE L  E++LVGEYGLR KRELW  +  L  IR  AR LL L  +   RI   + L+ R+++ G L      LD VL+LTV + LERRLQT+V++ G+  +I HAR LI   HI V  + V  P ++V  D +  I +   SP
Sbjct:    9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160          
The following BLAST results are available for this feature:
BLAST of CF831984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METKA1.496e-2741.0330S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_STAMF2.552e-2743.9530S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS9_ENCCU9.698e-2743.6440S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_HYPBU6.286e-2642.1430S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_THEAC1.829e-2541.4030S ribosomal protein S4P OS=Thermoplasma acidophi... [more]
RS4_PICTO2.389e-2541.6730S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_METJA3.120e-2539.3930S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_METB65.321e-2541.7730S ribosomal protein S4P OS=Methanoregula boonei ... [more]
RS4_THESM1.548e-2441.5130S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_THEPD1.548e-2442.8630S ribosomal protein S4P OS=Thermofilum pendens (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831984 ID=CF831984; Name=CF831984; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTCCCAAAAAAAAAAACAATTCTCTCAATGAGCCTTT
TGGAAGGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCA
AAAACATAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGA
GTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTAT
TCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGC
CTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGAC
TTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAAT
GAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGAT
GAGCACTCGAGCATGGGGAATTGACTTAACCATGCCACTCTTGAACACAA
GGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACA
TAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCT
CCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGA
GAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGCGTATTGA
ACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATACTCTCCCACAAGTCT
CAACTCAGCATCCAATCGCTCCTTCTCATAGGGACGTCTTGGCTTCTTGA
AGGTTTTCCC
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