CF831984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.641e-24 Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = -1 Query: 293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LTVE+ LERRLQT+V+K G+ +++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.449e-24 Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = -1 Query: 293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757 K ++ P P+ KERLD E L +Y L+ K+ELWR + L R AR LL K E + LL+R+HR G L + LD VL+LTVE+ LERRLQTLV+K G+ ++I AR LI HI V Q++ P ++V + + I ++ SPF Sbjct: 9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.449e-24 Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = -1 Query: 254 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 757 + ++ P P+ + L+ E L+G+YGLR KRELW Q + + R+ AR LL L R + L+++++R G +E+ LD +L L EN+LERRLQT+V+K G+ ++I AR LI HI +G + V P ++V + I+F TSPF P + N+ Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3) HSP 1 Score: 112.079 bits (279), Expect = 3.449e-24 Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = -1 Query: 272 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 757 K + P P+ K L E L+G+YGLR K+E+W Q + R+ AR LL L E+N R + L+++++R G LE+ + LD +L+LT EN+LERRLQT+V+K G+ ++I AR LI HI + + V P +VV + I++ TSPF P + Sbjct: 9 KKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24 Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = -1 Query: 293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757 K ++ P P+ KERLD E L+ +Y L+ K+ELWR + L R AR LL K E LL+R++R G L + LD VL+LTVE+ L+RRLQT+VFK G+ ++I AR LI HI V Q++ P ++V + + I +S TSPF Sbjct: 9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24 Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = -1 Query: 293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+ +++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24 Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = -1 Query: 293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+ +++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24 Identity = 61/164 (37.20%), Postives = 96/164 (58.54%), Query Frame = -1 Query: 272 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 757 KT+ +PR+P+E +R+ E+ L+ YGLR KRELW+ + L + R R LL + R E A++ R+ R+G L++ + LD +L+L + + LERRLQT V++ G+ +I AR I HI+V Q V +PS++V+ + I++ SP G P R Sbjct: 9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.684e-24 Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = -1 Query: 296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757 K + P P++K RL+ E++LV +YGLR KRELWR Q L + R ARDLL ++ + + +++++++ G L E+ LD +L L+VE+FLERRLQT+V++ G+ ++I AR I HI V + V PSF+V + + I F SP Sbjct: 9 KKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.236e-23 Identity = 58/155 (37.42%), Postives = 90/155 (58.06%), Query Frame = -1 Query: 293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757 K ++ P+ P+ KERL+ E L+G YGLR K+ELW+ + R R+ AR LL L + R L+ ++R G ++ +D VL + E LERRLQT+V+K G+ K+I AR L+ HI + + V P ++V + +K I+++ SPF Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161 The following BLAST results are available for this feature:
BLAST of CF831984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831984 ID=CF831984; Name=CF831984; organism=Citrus sinensis; type=EST; length=760bpback to top |