CF831984

Overview
NameCF831984
Unique NameCF831984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.641e-24
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+ +++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.449e-24
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K ++ P  P+ KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+ ++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.449e-24
Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = -1
Query:  254 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 757
            + ++ P  P+ +  L+ E  L+G+YGLR KRELW  Q  + + R+ AR LL L      R    + L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+ ++I  AR LI   HI +G + V  P ++V    +  I+F  TSPF    P +    N+
Sbjct:    9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.449e-24
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = -1
Query:  272 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 757
            K +  P  P+ K  L  E  L+G+YGLR K+E+W  Q  +   R+ AR LL L   E+N R     + L+++++R G LE+  + LD +L+LT EN+LERRLQT+V+K G+ ++I  AR LI   HI +  + V  P +VV    +  I++  TSPF    P +
Sbjct:    9 KKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+ ++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24
Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+ +++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24
Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+ +++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24
Identity = 61/164 (37.20%), Postives = 96/164 (58.54%), Query Frame = -1
Query:  272 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 757
            KT+ +PR+P+E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+  +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.684e-24
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = -1
Query:  296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757
            K +  P  P++K RL+ E++LV +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+ ++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:    9 KKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.236e-23
Identity = 58/155 (37.42%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  293 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 757
            K ++ P+ P+ KERL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+ K+I  AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
The following BLAST results are available for this feature:
BLAST of CF831984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_PYRHO2.641e-2442.5830S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_THEGJ3.449e-2442.5830S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_SULTO3.449e-2436.9030S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_SULAC3.449e-2439.0230S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]
RS4_THEON4.505e-2442.5830S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PYRFU4.505e-2441.9430S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB4.505e-2441.9430S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_METTP4.505e-2437.2030S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_ARCFU7.684e-2439.2430S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_AERPE2.236e-2337.4230S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831984 ID=CF831984; Name=CF831984; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTCCCAAAAAAAAAAACAATTCTCTCAATGAGCCTTT
TGGAAGGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCA
AAAACATAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGA
GTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTAT
TCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGC
CTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGAC
TTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAAT
GAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGAT
GAGCACTCGAGCATGGGGAATTGACTTAACCATGCCACTCTTGAACACAA
GGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACA
TAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCT
CCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGA
GAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGCGTATTGA
ACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATACTCTCCCACAAGTCT
CAACTCAGCATCCAATCGCTCCTTCTCATAGGGACGTCTTGGCTTCTTGA
AGGTTTTCCC
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