CF831984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23 Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = -1 Query: 257 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 757 K ++ P+RP+EK+R++ E R+V EYGLR KRE+WR Q L R R AAR+LL + + E LL ++R G L + D VL+L ++ LERRLQT+V++ G+ +S AR ++ HI + + V+IPS+ V D + I + TSP ++R N Sbjct: 9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHPEIERIN 177
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23 Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = -1 Query: 263 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 757 K + P+R +EK R+++E L YGLR KRE+WR L + R+ AR++L + + P+ I + L+ + RYG L +D +L+L VE+ LERRLQT+V++ G+ +S AR LI HI + Q V++PS++V + + I + TS G G +R Sbjct: 9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.814e-23 Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L++ +D +L+LT ++ LERRLQT+V+K G+ +I AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23 Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = -1 Query: 296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757 K + PR P+EK+R+D E +++ +YGL+ KRE+WR + LS IR+ AR L L + N ++ + E +++R+ RY L + LD VL+LTVEN L+RRLQT+VFK + S AR LI HI V + V +P +V + I + SP Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23 Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = -1 Query: 296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD---EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757 K ++ P+RP+E R++ E RLV EYGLR KRE+W + AL + R AAR+++ L + R + + L+ + R G L E+ + +D VLAL VE L+RRLQT V++ G +S AR I HI +G + V IP + V Q+ I ++ +SP Sbjct: 9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22 Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+ + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22 Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+ + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22 Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+ + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22 Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+ + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22 Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+ + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166 The following BLAST results are available for this feature:
BLAST of CF831984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831984 ID=CF831984; Name=CF831984; organism=Citrus sinensis; type=EST; length=760bpback to top |