CF831984

Overview
NameCF831984
Unique NameCF831984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = -1
Query:  257 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 757
            K ++ P+RP+EK+R++ E R+V EYGLR KRE+WR Q  L R R AAR+LL          +   + E LL  ++R G L    +  D VL+L ++  LERRLQT+V++ G+ +S   AR ++   HI +  + V+IPS+ V  D +  I +  TSP        ++R N
Sbjct:    9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHPEIERIN 177          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = -1
Query:  263 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 757
            K +  P+R +EK R+++E  L   YGLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+ +S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G    G  +R
Sbjct:    9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.814e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G+  +I  AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23
Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = -1
Query:  296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757
            K +  PR P+EK+R+D E +++ +YGL+ KRE+WR +  LS IR+ AR L   L   + N ++  + E +++R+ RY  L +    LD VL+LTVEN L+RRLQT+VFK  +  S   AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = -1
Query:  296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD---EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757
            K ++ P+RP+E  R++ E RLV EYGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT V++ G  +S   AR  I   HI +G + V IP + V    Q+ I ++ +SP
Sbjct:    9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+  +   AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+  +   AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+  +   AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+  +   AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+  +   AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
The following BLAST results are available for this feature:
BLAST of CF831984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METPE2.920e-2338.2430S ribosomal protein S4P OS=Methanosphaerula palu... [more]
RS4_METLZ2.920e-2336.3130S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS4_SULSO3.814e-2337.5030S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_THEVO6.505e-2340.1330S ribosomal protein S4P OS=Thermoplasma volcaniu... [more]
RS4_METHJ6.505e-2339.4930S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_SULIY1.449e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN1.449e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM1.449e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL1.449e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK1.449e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831984 ID=CF831984; Name=CF831984; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTCCCAAAAAAAAAAACAATTCTCTCAATGAGCCTTT
TGGAAGGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCA
AAAACATAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGA
GTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTAT
TCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGC
CTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGAC
TTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAAT
GAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGAT
GAGCACTCGAGCATGGGGAATTGACTTAACCATGCCACTCTTGAACACAA
GGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACA
TAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCT
CCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGA
GAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGCGTATTGA
ACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATACTCTCCCACAAGTCT
CAACTCAGCATCCAATCGCTCCTTCTCATAGGGACGTCTTGGCTTCTTGA
AGGTTTTCCC
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