CF831984

Overview
NameCF831984
Unique NameCF831984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+  +   AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 56/160 (35.00%), Postives = 94/160 (58.75%), Query Frame = -1
Query:  278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757
            + ++ P  P+  + L +E +++G+YGLR K+E+W  +  ++  R+ AR LL L      R    + LL ++++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+ ++I  AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:    9 RKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 65/164 (39.63%), Postives = 94/164 (57.32%), Query Frame = -1
Query:  269 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 757
            K ++ P  P+ KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT+V++ G+ +++  AR LI   HI V  Q++  P ++V  + +  I ++  SPF   G P R+
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.472e-22
Identity = 58/160 (36.25%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757
            K+F+ PR P+++ R+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L  EN LERRLQT V + G+ +++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.507e-22
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = -1
Query:  257 KSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 427
            KS+ HARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    2 KSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  314 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 757
            K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G  KS   AR LI   HIRV  + +  PS++V+++ +  IE
Sbjct:    9 KKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = -1
Query:  317 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 745
            KP++ + K+ L  EL+LVGEYGLR K+ELW  +  L  I   AR LL++  +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+ KSI HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = -1
Query:  341 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVV 745
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+   +LD +L+L V   LERRLQT+V++ G+ KSI HAR LI   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.039e-20
Identity = 58/137 (42.34%), Postives = 83/137 (60.58%), Query Frame = -1
Query:  341 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVV 745
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQTLVF+ G+ KSI HAR L+   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = -1
Query:  341 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVV 745
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD VL+L V   LERRLQT+V++ G+ KSI HAR LI   HI V  + V+ P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
The following BLAST results are available for this feature:
BLAST of CF831984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_SULIA1.449e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_METS51.449e-2235.0030S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_PYRKO1.893e-2239.6330S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_METBF2.472e-2236.2530S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS9_TOBAC5.507e-2284.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS4_KORCO7.192e-2237.8430S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_PYRIL7.952e-2140.0030S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_PYRAE7.952e-2141.6130S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_PYRCJ1.039e-2042.3430S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]
RS4_THENV1.356e-2043.0730S ribosomal protein S4P OS=Thermoproteus neutrop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831984 ID=CF831984; Name=CF831984; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTCCCAAAAAAAAAAACAATTCTCTCAATGAGCCTTT
TGGAAGGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCA
AAAACATAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGA
GTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTAT
TCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGC
CTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGAC
TTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAAT
GAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGAT
GAGCACTCGAGCATGGGGAATTGACTTAACCATGCCACTCTTGAACACAA
GGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACA
TAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCT
CCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGA
GAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGCGTATTGA
ACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATACTCTCCCACAAGTCT
CAACTCAGCATCCAATCGCTCCTTCTCATAGGGACGTCTTGGCTTCTTGA
AGGTTTTCCC
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